Gene Patl_3329 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3329 
Symbol 
ID4175106 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand- 
Start bp3992605 
End bp3993633 
Gene Length1029 bp 
Protein Length342 aa 
Translation table11 
GC content46% 
IMG OID638056360 
ProductD-erythrose-4-phosphate dehydrogenase 
Protein accessionYP_662889 
Protein GI109899634 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01532] D-erythrose-4-phosphate dehydrogenase
[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.738132 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATACGAG TAGCAATTAA CGGTTTTGGT CGTGTTGGTC GCAACGTATT ACGTGCGTTA 
TACGAAACAG GGCAAAACAA GCAAATACAA ATTGTGGCGA TCAATGAACT CGCCGAGCCT 
GAGGGCGTAG CACATCTATT AAAATATGAT ACTGCGCATG GGCGTTTCCG TTTTCCTGTA 
GTGCTAGACA ACCAACAGCT TGTGGTTGCT GGTGACCATA TCACTTTATT GCAGCAAGAA 
AATATTCGCG ACCTGCCTTG GGCGCAACTT GATATTGATG TGGTTCTTGA GTGTACCGGT 
GTCAATAATG AGCGGGTTCA CGGCGAACAA CATATCGCTC AAGGGGCGAA AAAAGTGTTG 
TTTTCTCAGC CCTGTGGCCC AGATGTTGAT GCAACGATTA TTATGGGGAT CAACGAGGAG 
TCTCTTAAAG CTAGCGATAG CATAGTATCT GCGGGTTCAT GTACGACCAA CTGCATCGTC 
CCTGTCATTC AAGTACTCGA TGAAGCATTT TCAGTTTCAA GTGGCACCAT CACGACTATC 
CATTCATCCA TGCACGATCA ACAAGTGATA GATGCTTACC ACCCAGATTT ACGCCGAACT 
CGTGCCGCTA GCCAATCAAT TATCCCAGTG GACACCAAAT TAGCCCGGGG AATAGAGCGG 
GTTTTACCTA AGTTTGCAGG CAAATTCGAA GCCATCGCTG TGCGCGTGCC GACTATTAAC 
GTTTCTGCAA TGGATTTAAG CGTAACCCTT GATGCCAAAG TGACTATCGA TGACGTGAAC 
CAAGCGTTAA AAACGGTAAA AAATGGGCGT TTGAATGGTA TTTTAGATTT TACTGAAGAG 
CCTTTGGTGT CAGTGGATTT CAACCACGAC GCACATTCTT GCATCGTGGA TGGCACACAA 
ACGCGAGTGA GCCACAAACA ACTGGTTAAA TTACTGGTGT GGTGTGATAA CGAATGGGGG 
TTTTCAAACC GAATGATTGA TATTGTACTC GTCATGAACA CCTTATCGCT GGGCAATACG 
GGCAAATGA
 
Protein sequence
MIRVAINGFG RVGRNVLRAL YETGQNKQIQ IVAINELAEP EGVAHLLKYD TAHGRFRFPV 
VLDNQQLVVA GDHITLLQQE NIRDLPWAQL DIDVVLECTG VNNERVHGEQ HIAQGAKKVL 
FSQPCGPDVD ATIIMGINEE SLKASDSIVS AGSCTTNCIV PVIQVLDEAF SVSSGTITTI 
HSSMHDQQVI DAYHPDLRRT RAASQSIIPV DTKLARGIER VLPKFAGKFE AIAVRVPTIN 
VSAMDLSVTL DAKVTIDDVN QALKTVKNGR LNGILDFTEE PLVSVDFNHD AHSCIVDGTQ 
TRVSHKQLVK LLVWCDNEWG FSNRMIDIVL VMNTLSLGNT GK