| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3303 |
|---|
| Symbol | |
|---|
| ID | 4175080 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 3965555 |
|---|
| End bp | 3966451 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638056334 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_662863 |
|---|
| Protein GI | 109899608 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACCGGA TCACATCATT GCAAAGCTTC ATAGAGGTGG CGCGTTGTAG CAGCTTTACT
AAGGCGGCAG ATAGTATTGG ATTAAGTCGT TTGCAAGTGA CTCGCCACGT TCAAGATATT
GAACAGTGGT TAGGTTTACG CTTGTTTCAT CGCACCACAC GTAAAGTAAG TTTGACTCTA
CAAGGCGAAG AAACGTTGGG GTTTGCTAAG CAAATACTCA GTTCGGTTTC GGATCTGGAG
AGCCGTGCTC ATAGTCACAA CCACGAACTC GTTGGGACCA TTCGAGTTGC GACCCCAATT
GGCCTTGGTC AAAATATGCT GTTTGATGCC ATTCAAGCAT TTGTGGCTAT TCACCCCAAA
ACCCATATTC AAATGGTGTT ATCTGATGGG CTGTCGCAGC TAGTGGATGA GCGAGTTGAT
ATTGCGCTGC GCTATATTGA TCAACCACAT CAGCAATTAA TTGCTAGAAG GCTAATGCAC
ATCGATAGCG TTCTGTGTGC AACTCCTGGC TATATTGCGG AGCACGCCAA ATTGAATCAA
CCCAGTGATT TGCTCGCGCA TAATTGTCTT GTTCACAGTA GTAACCCTCA TTGGCGGGTA
GTCAGTGCAA CAAGCGACGA GAAAGTCCCT GTATCAGGCA ACATACAAGC CAATGAAATG
GGCGTTATTT TAAAGGCGGC GCTGCGCGGG TTAGGCATTG CGTGTTTACC AAGTGATTTG
GCCAATCATT ATTTGCTGAA CCGTGAACTG GTTCAAGTGC TGCCTGATTA CAACACACCT
GGCAGTAATC TGTGGGCGGT GTATTTGTCT CGTGACCACC AGCAAAATGT GGTGCGGGCT
TTTATTGATT TTCTCGTCGA GCGTTGGCAA GCGGATATAG TGCGGGTTAC AAATTGA
|
|---|
| Protein sequence | MDRITSLQSF IEVARCSSFT KAADSIGLSR LQVTRHVQDI EQWLGLRLFH RTTRKVSLTL
QGEETLGFAK QILSSVSDLE SRAHSHNHEL VGTIRVATPI GLGQNMLFDA IQAFVAIHPK
THIQMVLSDG LSQLVDERVD IALRYIDQPH QQLIARRLMH IDSVLCATPG YIAEHAKLNQ
PSDLLAHNCL VHSSNPHWRV VSATSDEKVP VSGNIQANEM GVILKAALRG LGIACLPSDL
ANHYLLNREL VQVLPDYNTP GSNLWAVYLS RDHQQNVVRA FIDFLVERWQ ADIVRVTN
|
|---|
| |