| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3295 |
|---|
| Symbol | |
|---|
| ID | 4175072 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 3953606 |
|---|
| End bp | 3954964 |
|---|
| Gene Length | 1359 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638056326 |
|---|
| Product | two component, sigma54 specific, Fis family transcriptional regulator |
|---|
| Protein accession | YP_662855 |
|---|
| Protein GI | 109899600 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR02915] putative PEP-CTERM system response regulator |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAGA TTTTAGTCGT TGATGACGAC TTAGGTATTC AAAAGCAGTT GAAGTGGAGC
TTCTCGGGCT ATGATGTGGT GTTTGCAGAT GATCGCACCT CTGCGATCAC TCAGTTACGC
CGGCATGAGC CTAAGGTGAT TACCCTTGAT TTAGGGTTGC CGCCAGATCC TGCCAATGCC
ACTGAAGGCC TAGCTGCGCT TCAAGAAATA CTTGCGTTAT CCCCTAACAC CAAAGTGATT
GTGGTAACTG GCAACAACGA CAAAGTGAAT GCCTTAAAAG CGATTGAGCT TGGTGCGTAT
GACTTTTATC AGAAACCCAT TGACTCAGAT ACCATTCAAG TATTGGTCAG CAGAGCAGCA
CAGCTCTACG ATTTAGAGCA AGAAAATCGT CACTTGTCTG CGGTGGCGCC CTCAATGGAT
CGTATTATAG GCAACAGTGA ACAGATTTTA GCGGTCAGTA AAAAAGCTGA ACGCATTGCC
CAAACTGATA TCAGTACGCT GTTATTAGGG GAGAGTGGCA CGGGTAAAGA AGTGTTTGCG
CGCAGCATTC ACGAACACAG CTTACGCAAA AACAAAGCCT TCGTTGCTAT TAACTGTGCC
TCGATCCCAG AAAATTTGCT CGAAAGTGAA CTGTTTGGTT ATGAGAAAGG CGCGTTTACA
GGCGCAAATA AAACCACACC AGGTAAAATT GAAAGTGCTC AAGGCGGCAC ACTTTTTCTA
GATGAAATCG GTGATATGCC TGTAGGCTTA CAAGCTAAGA TGCTGCGTTT TTTACAAGAG
CGTGTTATCG AGCGAGTAGG CGGGCGTACT GAGATCCCAG TCGATATTCG TGTTATTTGC
GCGACCCATC GTGATTTAAA TAGCATGGTC GCACAAGAGA CATTTCGCGA AGATTTGTAT
TACCGGATAG GGGAAATCAA CATCGTGATA CCGCCACTGC GTGAGCGTGG TAACGATGTG
ATTTTGCTGG GTAAAACCTT CTTAAATCAA TACAACGAAG ACTTCAAAAC AAAAGTGAAG
GGCTTCAGTG ACAGCGCAGC ACAAGCCATG TTGCAGCATC GCTGGCCGGG TAACATTCGT
GAATTACAGA ACAAGCTTAA ATCTGCGGTG ATCATGGCTG AGTCAGCTTA CATTCAACCA
GATGATTTAG GTTTGCAGGT AAATGAAGAA CTCAACACCA TGCGCACACT TAACCTGCGT
GAAGTGCGCG AGGAAGCTGA GAGCAAAGCT ATTCGTTATG CGTTTCAAGT GGCCGAGCGC
AATATGTCGC GCACTGCTGA ATTACTTGGG GTGACACGCC CTACGCTTTA TTCGCTGATT
GATAAGTACC ATCTAGAGGA CATTAAAACT GGTTCCTAA
|
|---|
| Protein sequence | MEKILVVDDD LGIQKQLKWS FSGYDVVFAD DRTSAITQLR RHEPKVITLD LGLPPDPANA
TEGLAALQEI LALSPNTKVI VVTGNNDKVN ALKAIELGAY DFYQKPIDSD TIQVLVSRAA
QLYDLEQENR HLSAVAPSMD RIIGNSEQIL AVSKKAERIA QTDISTLLLG ESGTGKEVFA
RSIHEHSLRK NKAFVAINCA SIPENLLESE LFGYEKGAFT GANKTTPGKI ESAQGGTLFL
DEIGDMPVGL QAKMLRFLQE RVIERVGGRT EIPVDIRVIC ATHRDLNSMV AQETFREDLY
YRIGEINIVI PPLRERGNDV ILLGKTFLNQ YNEDFKTKVK GFSDSAAQAM LQHRWPGNIR
ELQNKLKSAV IMAESAYIQP DDLGLQVNEE LNTMRTLNLR EVREEAESKA IRYAFQVAER
NMSRTAELLG VTRPTLYSLI DKYHLEDIKT GS
|
|---|
| |