| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3288 |
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| Symbol | |
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| ID | 4175065 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 3947264 |
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| End bp | 3948454 |
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| Gene Length | 1191 bp |
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| Protein Length | 396 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638056319 |
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| Product | putative oxygen-independent coproporphyrinogen III oxidase |
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| Protein accession | YP_662848 |
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| Protein GI | 109899593 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
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| TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAACA CTTGCGAAAT GAATGACGCC GGTGAAACGA ACACAACGCT CCCCCCTGTT
GCCTTGTATA TTCATATTCC TTGGTGCGTG CAAAAGTGCC CCTATTGTGA CTTTAACTCC
CATGGTCAAA AGCAGGACTC CTTGCCAGAA GCTGAATATG TCAGTCATTT ACTAGATGAT
TTAGCCCAAG ACGCCAACCT GATTGGCGAT CGTCCCGTGC ACAGTATTTT CATCGGTGGC
GGCACTCCGA GTCTGTTTTC GCCCGATGCC ATAGGGCGCC TATTAACAGG GGTGCGTGAG
CGCGTCAATT TAGCAGTCGA TGCCGAAATA ACCCTTGAAG CTAACCCTGG CACAGTGGAA
AGCGAACGTT TTAATGGCTT TGCCCAAGCT GGGGTAAACC GTATATCAAT TGGCGTGCAA
AGCTTTCAGC AAGAGAAATT GGAAAGACTT GGGCGTATCC ACGATGAGCA ACAAGCGTTA
AATGCTGCCG GTTACGCACG CAATGCTGGC CTGAATAGTT TCAACCTTGA TTTGATGCAT
GGCTTGCCTG AGCAGTCCAT TGACGATGCC TTGTTTGATT TGCGCCAAGG CATTGCCCAG
CAGCCGCCGC ATCTGTCTTG GTACCAGCTG ACGATTGAAC CCAATACTCA GTTTCATTCT
AAGCCGCCGA CGTTGCCAGA GGATGACATA TTGTGGGACA TTCAAGAGCA AGGCCATGAC
ATACTGACCG CAGCAGGTTA TGAGCAATAC GAAATATCGG GCTACAGCTT GGCCGGCCAA
CAATGTCAGC ACAATCTTAA TTATTGGCGC TTTGGTGATT ATTTAGGGAT TGGCTGTGGT
GCCCACGGTA AAATCACACT GAAAGACTCG GGCCAGATTT TACGCACGGT TAAAGTGAAA
CACCCTAAGG GCTATATGGA TCTCACGCGC TCATACATGC ACCAACAACA TACTGTGCAA
GATGAGGAGT TACCGTTCGA GTTTTTCATG AATCGATTAC GCTTACTTGA GCCTTGCCCA
AAACAAGACT TTAGCGCTTT CACTGGTTTA GTCTTTGATG AGCAAACAGA CCTAAAAGAA
AACCTGGCCA GTGCAGTGAA CAAGGGCTTA CTTGCCGAAT CAGACACCCA TTGGCAAGTC
ACACCACTTG GCAGGCGCTA CCTTAATTCA TTGTTAGAAA TGTTGGTGTA A
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| Protein sequence | MANTCEMNDA GETNTTLPPV ALYIHIPWCV QKCPYCDFNS HGQKQDSLPE AEYVSHLLDD
LAQDANLIGD RPVHSIFIGG GTPSLFSPDA IGRLLTGVRE RVNLAVDAEI TLEANPGTVE
SERFNGFAQA GVNRISIGVQ SFQQEKLERL GRIHDEQQAL NAAGYARNAG LNSFNLDLMH
GLPEQSIDDA LFDLRQGIAQ QPPHLSWYQL TIEPNTQFHS KPPTLPEDDI LWDIQEQGHD
ILTAAGYEQY EISGYSLAGQ QCQHNLNYWR FGDYLGIGCG AHGKITLKDS GQILRTVKVK
HPKGYMDLTR SYMHQQHTVQ DEELPFEFFM NRLRLLEPCP KQDFSAFTGL VFDEQTDLKE
NLASAVNKGL LAESDTHWQV TPLGRRYLNS LLEMLV
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