| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3286 |
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| Symbol | |
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| ID | 4175063 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3945297 |
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| End bp | 3946403 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638056317 |
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| Product | TonB family protein |
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| Protein accession | YP_662846 |
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| Protein GI | 109899591 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
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| TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACATTTA CCGCCAAATT ACTCCTCATT AGTAGTGCAA GTTTAATCAC TGGTAATGCG
AGTGCTATCA ATAAGCCTCA AACGGAAGCA CAGGCCCACC ACATCGCAAT CAGCGAACCA
AGCACTGTGC TTTTGGAGTC CGCTAAGCTC CCCGAACCTA TTGAACGTGT AGCACCTAAA
TATCCAGTGA GCATGGCACG AAAAGGCGCT GAGGGCTGGG TGCAATTGAA TTTTGTGGTG
GGTACTGACG GCAGCGTCAA CAATATCGTT GTGGTTGATT CAAGTGGTAT GAAAGCCTTT
GAAAGCGCAG CAATAAAAGC AATGAAAAAC TGGCAATACA GCCCGGCTTT TGTTGATGGC
AAACCAATTG AGCAATGCCA CAACAAAGTA CAAATGGACT TTAAGTTAGA CGGGGGGGAA
AGAGGGGTTA GGCGCAAGTT TAAACGCAAT TATGAGAGTG TGCGTGCTGC ACTAAGCAGC
AATGATATTG CCTTAGCGCG TGAGTTGAGT GACAACATGA AAGACAAAGG CTTGCTCAAT
AGCATAGAGT TTAGCTTTTA TTCGTTGCTA CGTGCTGACT TGGCAAAGGC TGAAGCGGAT
GAGGTGGCTG AGCTTAAGCA CGTTCAACAT ATATTGAATA CTGATAGCAA AGGCAAGTAC
TTGGGCAGCG AAGCGCATCG ATTATTGTTA AACCGTAAGT TTGTGCTGCA AATCAATCAG
TCCCAATACC TTGACGCCTT AGATACGTTT CAGCGGGTTG AGACGCAAGA AAATAACGAC
GAAAGCATCG CCATGCTCAA ACCTTATGTG ACCCAAATAC TCAATGTGCT CAAAAGCGAC
CAAGTCATAG CCATTCCAGG GAAAGTCAAA CAAGACGGTG ATTGGTGGCA TGCCCTGAGC
AGGCGCGCCT TTAGTTTACA TGACGTGAAC GGCACCCTAA ATACAGTGGA ACTGCGTTGT
CACAATAAAA GCGAGTTATA CACAGCGACC ACAGACAGCA CATGGAATAT ACCCGCTAGT
TGGGGACGTT GCAGTGTAAG GGTGGTAGGA GATACCGACA GCCAATTCAC CTTGCTAGAA
ATACCCACCA AGAGTGAGCA GAGTTGA
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| Protein sequence | MTFTAKLLLI SSASLITGNA SAINKPQTEA QAHHIAISEP STVLLESAKL PEPIERVAPK
YPVSMARKGA EGWVQLNFVV GTDGSVNNIV VVDSSGMKAF ESAAIKAMKN WQYSPAFVDG
KPIEQCHNKV QMDFKLDGGE RGVRRKFKRN YESVRAALSS NDIALARELS DNMKDKGLLN
SIEFSFYSLL RADLAKAEAD EVAELKHVQH ILNTDSKGKY LGSEAHRLLL NRKFVLQINQ
SQYLDALDTF QRVETQENND ESIAMLKPYV TQILNVLKSD QVIAIPGKVK QDGDWWHALS
RRAFSLHDVN GTLNTVELRC HNKSELYTAT TDSTWNIPAS WGRCSVRVVG DTDSQFTLLE
IPTKSEQS
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