| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3278 |
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| Symbol | |
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| ID | 4175055 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3933837 |
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| End bp | 3936857 |
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| Gene Length | 3021 bp |
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| Protein Length | 1006 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056309 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_662838 |
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| Protein GI | 109899583 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000542759 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACACAT ATGCGAAATT TAATAAGTCA CTACTGACCA AGAGTATTTC AATACTGCTT
GGTACGACAG TACTTGCTCC TGTGGTTGCC GTTGCTCAAG AAAGCGCGAA TGACTTGGAG
GTGATCCAAG TACGAGGCAT GCGCTCGAGT ATTCAAGAAT CTATGGGGAT TAAACGTGAT
TCTGCTGGTG TGGTTGATGC CATTTCTGCA GAAGACATAG GTAAGTTTCC GGATACTAAC
TTAGCGGAAT CTTTGCAACG CATCACGGGT ATTTCTATTA GTCGGAGTAA CGGTGAGGGA
AGCCAGATTA CGGCTCGAGG CTTTGGACCT GATTTTAATA TGGTGACGCT AAATGGTCGT
GCCATGCCAG GTGCTGCTAT TCCTGGCGGT GGTGGCACGC CAAATTCACG GGCTTTTGAT
TTTGCCGATT TAGCCTCTGA AAGCGTACGT GGTGTGGAAG TGTACAAAAC TGGTCGTGCT
AGCATAGCAA CGGGCGGTAT CGGGGCAACC GTTAACATTA AGACGGCGCG CCCACTAGAC
GCACTGGAAA GCGGCTTTAC CGGCTCTGTT GGCGCAAAAG CATTGATGGA CACCACTAAC
CGTGTGGGGG ATGACGTAAC GCCTGAAGTA TCAGGGTTCT TTAATTTTGT TGATGACGAC
GGCATTTTTG GTGTGTCTTT ATCTGCCAGT GTACAAGAGC GTGACAGCTC AGCAGTGGGT
GCATTTGTTA ATGAATGGCG TGTTAACCCA TACGAGGGCA GCATTCCACA ATCACCTAAC
CAAACCGATC CTAATTTACC TGGCTTTAAT GGGCCAGCGG TGGTGGTAAA CAATGGTCCA
GCAGACGGTC AACTGTTTGC CATTCCAGCT GATTTACGTT ACTCAATTGC TGATCGTGAA
CGTAAACGTA CTAATGCGCA GCTTACTTTT CAATATGCCC CATCAGAAGA TTTAACCGCA
ACCTTGGATT ACACCTATTC AAAACAGGAC CTATACGAGG CTCGCGCAGA GCAATCCATC
TGGATGGATG ATGGCTACTT CTCAGAGCTT ACCTTTGACG ACGAAGTGGT TAAAACCCCT
ATATTGATTG AACAAGAACG CCGTGATTTA CTGCCGCGCG ATTTGGGGCT AGCCATTCAG
GAGCTGAACC AAGTCAATGA AAACAAATCT GTTGGTTTTA ATGTTGAGTA CCACGTCAAC
GACAGCTTAG TCATGTTCTT CGATGTGCAT GATTCATCAG CCGAAGGGCG CCCAGATGCG
CCTTATGGTA CCTGGACTAA CCTAGGGTTA GGGGCCAATG TTAACCGTGG GCAGGGGGCT
GACTTCTCTG GTGATTTCCC TATCATGACG GTAGATTTTG ATGACGCTGC GCGTGACAAC
TTAAACGGTA ATGGCGTGCT TGACCAAGAT GATGTAGGTA CTGCAATTCT TGATATGAAT
TTTAATTCTC AGCGCACGGA TATCACCCAA TTCCGTTTGG ATGGTGAGTA CTCATTTGAC
GATGGCGGGA TTAATTTCGG TGTTGAATCG CGCTCAATGG AAAGCACGTC ACTGCAATCA
TTAACCAGAC GTACCATGGG TAACTGGGGT ATTGAAAACC CGGGTGAATT GCCAGCGGAC
TACTTAACGC CGTTTAGTTT TGCCGACGAG TTTGATGACT ACAACACCAA CGGCATTTTC
AGCCAAGGTT TCACTGGTGA TGTAGCACAG ATTGGCGCAT TTGCCGCGCA GGAATACGGC
TTCGCATTTG CAGCCGATAA CCCGTTCGCC ACTAATCGCA CAATTGAAGA AGACATATTT
GCGGCTTATG TAGAGTTTGA ATTAGACGGA GAGTTAGGTG GTCGTCCGTA CAATATCCTT
GCGGGTGTTC GTTACGAAAG CACTGATTCT ACGTCGGTCG CTAACATCAG CTTGCCCAGT
GCAATAGCGT GGGAAGGTAA TAACGATTTT AATGTGCGCT TTGGCTCTGA GACTCAAGAC
GTGGCTGTTG ATTCTGACTA CGACCATATT CTACCTAGTA TTGATTTTGA TATTGAAGTG
ATGGATGGCG TTAAGGCGCG TTTGTCTTAC AGCAAGACCA TTGCTCGCCC AACGTACAAT
AACTTGAGCG CGGCAGCATC CGTGGGCACG CCAAGCGGTC CAACGCTAAT CACCCAAGGC
GCAACTGCAA CCGCTAGCTC AGGTAACCCC TCTTTGGTGC CACTTGAATC TGACAATATC
GATTTATCCG TTGAATACTA TTTTGAAGAT ACCAGTTATG TATCGTTAGG CTTCTACGAT
AAACGAGTGA AGAACTTTAT TGGTAACGAG CAGGTGGAAG AAAGCGTATT CGGTCTACGT
GATGCGACCG CTGGTCCACG TGCAGAGGCT GCGGCCGCTG AACTTGAACG TATTGGACAA
CCGTTAACCG ATACTAATTT GTTTAACATG GTGGCAGCCA TGGAAAACAA CATCGCTTAT
GACTCGTTAA CCATAGAGCA ATTCGAAGCC CAGTATGATG TGTTACCTAA TGAAGATGAC
CCATTCTTAA CCTTTATTAA TTCAAAACCA GTGAATAATA AGAACGCCAA TATTTATGGC
TTCGAGCTGG CTGCTCAGCA CTTCTTCGGA GACACGGGCT TTGGTTTACA AGCTAACTAC
ACCACAGTCA ATGGTGATGT AAGTTACGAT ATCACTGCTA ACCCATCGGT AACGCAATTC
GCGTTAGTGG GCTTAAGTGA TACGGCAAAC TTGGTTGCCA TGTATGAGAA AGATGGCTGG
CAGGGGCGTA TTGCTTACAA CTGGCGTGAT AAGTTTTTGG ACACCACGAG TCAATATGTG
AATGAACCGG GCTTTACCGA GTCTTACTCG CAAATCGATT TTAATGTGTC GTATCAAGTG
AATGATGATT TATCTGTATT CCTTGAAGGG ATAAACATTA CGGATGAGAA CAGTCGCCGT
CACGGGCGTA CGTCCGCTCA ATTATGGAAC TTGGAACAAC TTGGCGCGCG CTACGCGCTA
GGTGCCCGAT ATACGTTCTA A
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| Protein sequence | MNTYAKFNKS LLTKSISILL GTTVLAPVVA VAQESANDLE VIQVRGMRSS IQESMGIKRD
SAGVVDAISA EDIGKFPDTN LAESLQRITG ISISRSNGEG SQITARGFGP DFNMVTLNGR
AMPGAAIPGG GGTPNSRAFD FADLASESVR GVEVYKTGRA SIATGGIGAT VNIKTARPLD
ALESGFTGSV GAKALMDTTN RVGDDVTPEV SGFFNFVDDD GIFGVSLSAS VQERDSSAVG
AFVNEWRVNP YEGSIPQSPN QTDPNLPGFN GPAVVVNNGP ADGQLFAIPA DLRYSIADRE
RKRTNAQLTF QYAPSEDLTA TLDYTYSKQD LYEARAEQSI WMDDGYFSEL TFDDEVVKTP
ILIEQERRDL LPRDLGLAIQ ELNQVNENKS VGFNVEYHVN DSLVMFFDVH DSSAEGRPDA
PYGTWTNLGL GANVNRGQGA DFSGDFPIMT VDFDDAARDN LNGNGVLDQD DVGTAILDMN
FNSQRTDITQ FRLDGEYSFD DGGINFGVES RSMESTSLQS LTRRTMGNWG IENPGELPAD
YLTPFSFADE FDDYNTNGIF SQGFTGDVAQ IGAFAAQEYG FAFAADNPFA TNRTIEEDIF
AAYVEFELDG ELGGRPYNIL AGVRYESTDS TSVANISLPS AIAWEGNNDF NVRFGSETQD
VAVDSDYDHI LPSIDFDIEV MDGVKARLSY SKTIARPTYN NLSAAASVGT PSGPTLITQG
ATATASSGNP SLVPLESDNI DLSVEYYFED TSYVSLGFYD KRVKNFIGNE QVEESVFGLR
DATAGPRAEA AAAELERIGQ PLTDTNLFNM VAAMENNIAY DSLTIEQFEA QYDVLPNEDD
PFLTFINSKP VNNKNANIYG FELAAQHFFG DTGFGLQANY TTVNGDVSYD ITANPSVTQF
ALVGLSDTAN LVAMYEKDGW QGRIAYNWRD KFLDTTSQYV NEPGFTESYS QIDFNVSYQV
NDDLSVFLEG INITDENSRR HGRTSAQLWN LEQLGARYAL GARYTF
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