| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3275 |
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| Symbol | |
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| ID | 4175052 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3928521 |
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| End bp | 3930062 |
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| Gene Length | 1542 bp |
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| Protein Length | 513 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638056306 |
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| Product | sugar (glycoside-Pentoside-hexuronide) transporter |
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| Protein accession | YP_662835 |
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| Protein GI | 109899580 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2211] Na+/melibiose symporter and related transporters |
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| TIGRFAM ID | [TIGR00792] sugar (Glycoside-Pentoside-Hexuronide) transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACCT TACCCTTATA CGAGAAAATT GGCTACGCCA TGGGGGACGC GGCTGCGAAT
TTGGTGTGGC GTGGCGCCTT AGCTTACTTA GCTGTGTTCT ATACCGATAC GTTTGGCTTG
GCAGCGTCTG CTGCGGCTAT TTTATTTTTG GTGGTGCGCC TGACCGATGG TGTAACAGAC
ATCATCATGG GGATGATTGC TGATCGTACT CACACCGCTT GGGGTAAATT TCGACCTTGG
ATTTTGTGGT CTACCCCTTT TTTAGGGGCG TTTATGGTGC TGTGCTTCAC CACACCAAAC
TTGAGTGACA CAGGCAAATT AGTTTATGCC TATTTGACCT ACATAGGTCT AACGCTGGCG
TACACCGTTA ATAACGTCCC TTATTCTGCT TTGATGGGGG TGATGACCGA AGATGATAAA
GAGCGCACTA GCTTGTCTGG ATTTCGTTTT GCTGGTGCCT TCGTGGGAGG CTTATTTGTG
ATGGGTTTTC TGCCAAGCCT AGTAGCTATG TTAGGGAGCG GTGACGACGT GCAAGGGTAT
CAGTACACCA TGTATGTGTT CGCAGGCCTA TTAATGGCTC TTATGGTGAC ATCCGTCGCA
ACGACAAAAG AGCGGGTTAT TCCCATTGAA CAAGTGCGCG GCAGCTTTCG CAGTGAGTTA
TGGGATTTAG CCAAACAATC TCCTTTTGTA CTTGTGCCAC TGCTCTCAAT GAGCCTATTT
TTCTATTACC GCAATCTTGC GACTGGCGTT CTGTTTGTGC TGGTTTTCGC AACCGCTACC
TGGTTGGTGC GCCGGATGTT AAGTCGTCCT CGGGGAGATG TGTCAGGTAC CCAGCAAGAC
ATGCTCGATC TGTTGACGAA TCGCCCTTGG CTTATTCTAC TTGGGATGGG CTTTCTTACT
ATGATGTTCA ACGGTATTAA GTACAGCGTG ATTGCATATT ACTTCAAGTA CTTTGTGGGC
GATGAGTTAC TCACAGGCCA GTATTTTATC GCCTTGTTGG TAGTGTCAAT CATAGGTGCA
CTGTGCACTA GCTACTTAGC GAATAAGCTT GGTCGGCGAA ATTTGTTTAT TGTTGCCCTG
CTTCTAAGTA GTGCCCTAAC GTGCGGGTTT TATTGGATAC CAGGGGAAGA CATTGGCTAC
ATATTTATTC TTGGCTGTAG CGCGGAATTT TTTGCTGCAA TGATGCCAAC CTTATTCTTT
AGCATGTTAG GTGATGCCGC TGATTACTCA GAATGGCGGA ACGGTCGCCG GGCGACTGGC
CTTGTATATT CCGCGGGGAC TTTTGTGCAA AAAACCGGTA ACGGTTTCGC AGGCGCGTTG
GTGCTGGTTG TGTTGGCGGG CTATGGCTAT GACGGTATGG ATGCGAGCAC GATTGAAGCC
TCACTCCCTG GCATGCAACA GCTTATGAGC TTTATTCCCG CAGCTTTTGG GTTAGCCGGA
GCATTGCTGA TGCTGTTTTA TCCATTAACG GATAAAAAGC AACAGCTAAT GAACACCCAG
CTTATTGAGC GCAGAAACGC CATTCAAACT AATCATCAAT AG
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| Protein sequence | MKTLPLYEKI GYAMGDAAAN LVWRGALAYL AVFYTDTFGL AASAAAILFL VVRLTDGVTD
IIMGMIADRT HTAWGKFRPW ILWSTPFLGA FMVLCFTTPN LSDTGKLVYA YLTYIGLTLA
YTVNNVPYSA LMGVMTEDDK ERTSLSGFRF AGAFVGGLFV MGFLPSLVAM LGSGDDVQGY
QYTMYVFAGL LMALMVTSVA TTKERVIPIE QVRGSFRSEL WDLAKQSPFV LVPLLSMSLF
FYYRNLATGV LFVLVFATAT WLVRRMLSRP RGDVSGTQQD MLDLLTNRPW LILLGMGFLT
MMFNGIKYSV IAYYFKYFVG DELLTGQYFI ALLVVSIIGA LCTSYLANKL GRRNLFIVAL
LLSSALTCGF YWIPGEDIGY IFILGCSAEF FAAMMPTLFF SMLGDAADYS EWRNGRRATG
LVYSAGTFVQ KTGNGFAGAL VLVVLAGYGY DGMDASTIEA SLPGMQQLMS FIPAAFGLAG
ALLMLFYPLT DKKQQLMNTQ LIERRNAIQT NHQ
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