| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3251 |
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| Symbol | |
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| ID | 4175028 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3900253 |
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| End bp | 3902286 |
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| Gene Length | 2034 bp |
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| Protein Length | 677 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056282 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | YP_662811 |
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| Protein GI | 109899556 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTGGCTG AATTAGGTAA TATTTCACTG GTCTTAGCGT TACTCATGGC TATATCACTC
GCTATTTATC CTTTGTGGGG CGCACAAAAA GACCACTTAA AACTGATGCA AATGGCCAAA
CCGCTGGCCA TCGGTATGTT TGCGTTTACC CTAGTTGCGT ATATTTGTTT AACGTGGGCA
TTTGTACACG ACGATTTCAG CTTGGCGTAC GTGGCGAGCA CCTCTAACAG TACCTTGCCG
CTTGTGTATA AATACACTGC CGTATGGGGC GGGCATGAAG GCTCATTCTT GCTGTGGGTA
ATGATCTTTT CGATTTGGAC CGTCGCTGTC GCGTTGTTTA GTAAAGCGAT AGAGCTGAAA
ATGGTGGCTC GCGTTTTGTC TATTCTTGGC ATGGTAGCGA TTGGTTTCTA CTTGTTTATG
TTGCTTACAT CGAATCCATT TGATGTATTA CTCCCGTTTT ATCCTGTTGA TGGGCGTGAT
CTAAACCCGC TTCTTCAAGA CTTCGGCATG ATAATTCATC CGCCTATGCT GTACATGGGG
TATGTTGGGT TTTCTGTGGC TTTCGCTTTC GCCTTAGCCG CATTGATTTC TGGTCAGTTA
GATTCAACGT GGGCCCGTTG GTCTCGCCCT TGGACTATTG CTGCATGGTC ATTTCTCACC
GTAGGGATCG CCCTAGGTAG TTGGTGGGCT TATTATGAAC TTGGCTGGGG CGGTTGGTGG
TTTTGGGATC CTGTTGAAAA CGCCTCATTT ATGCCGTGGC TCGTAGGTAC CGCGTTAATG
CACAGCTTAG CGGTAACCGA GAAGCGCAAA GTGTTTAAAT CATGGACTGT TTTACTGGCT
ATTGCTGCGT TCTCGTTAAG CCTACTTGGT ACATTTTTAG TGCGCTCGGG TATTTTGGTG
TCTGTGCACT CTTTTGCCAG TGACCCAAGT CGAGGTCTCT TTATTTTAGG TTTACTTGTT
GTGGTGATTG GCGGATCTCT TTTACTGTTC GCAATCCGTG CACCACAACT TAAAGGCGCA
GGACGTTACA AATTATTCTC CCGTGAGGTG ATGCTCGCTG GAAACAACGT CTTTCTGACC
GCGGCCTGCT TGGTGGTGTT ATTAGGAACA CTTTTACCAT TAGTGCACAA AGAGTTAGGT
CTGGGGTCTA TTTCTATTGG CGCGCCTTTC TTTAACCAAA TGTTTAGCTA TTTGATTGTG
CCCTTTGTAT TACTGATGGG CATCGGGCCA TTGTCACGCT GGAAGAATCA GGCTCCCTCG
GCGCTGTATA AACAGTTATT GCTCGCGTTT GGACTGAGCT TGTCCGCTGC TATCTTGGTG
ACTGCGAATT TTGAGCAGAC ATCCTATATG GCGGCGTTAG GCATGGTTAT GGGATTCTGG
ATCGTGGTCA CTACGATCAT GGAAATACAC CAGCGAATTA ATGCTGATAA AAAACTGTCA
CAACAACCGA TTTTCTCGGC CTTGGCTAAA CTGACGCCTA GCCATTGGGG CATGGTGGTC
GGCCACTTGG GCTTCGCTGT CAGTATTATT GGTATCACTT TAGTAAGTAA CTATAACCAA
GAAAAACACG TGCGTATGGC GTATGGCGAA ACCGTCCAAC TCATGGGTTA TGACTTTACC
TTTAAGGGTG TAAGTAATGT TAAAGGGCCT AATTACACTG GCTATCAAGC GCATGTAGTG
GCGAAACAAG ACGGTGAAGT AGTCGCTAGC CTGGAAGCTG AAAAACGGAT TTATACCGTG
CAGCGCAATG TGATGACAGA GGCAGGAATT GATTCAAATA TTCACCGCGA CTTGTTTGTC
GCACTTGGCG AGCAACTTGA CGATGGCGAT TGGGCTTTGC GCATCTACGT AAAACCGTTT
GTAAATTGGA TTTGGGCCGG CGCTTTCATC ATGGGATTTG GTGGCATTTT GTCTATCTCA
GATAAGCGTT ATCGCATGCA GAAACTAGCT AGCAAGAAAG TTGCTAAAGA CCAAACAAAA
CTGAACGCGC CACAGGTGCC AGCTTCTCAA GATGCAGTGG AGTCTCAATC ATGA
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| Protein sequence | MVAELGNISL VLALLMAISL AIYPLWGAQK DHLKLMQMAK PLAIGMFAFT LVAYICLTWA
FVHDDFSLAY VASTSNSTLP LVYKYTAVWG GHEGSFLLWV MIFSIWTVAV ALFSKAIELK
MVARVLSILG MVAIGFYLFM LLTSNPFDVL LPFYPVDGRD LNPLLQDFGM IIHPPMLYMG
YVGFSVAFAF ALAALISGQL DSTWARWSRP WTIAAWSFLT VGIALGSWWA YYELGWGGWW
FWDPVENASF MPWLVGTALM HSLAVTEKRK VFKSWTVLLA IAAFSLSLLG TFLVRSGILV
SVHSFASDPS RGLFILGLLV VVIGGSLLLF AIRAPQLKGA GRYKLFSREV MLAGNNVFLT
AACLVVLLGT LLPLVHKELG LGSISIGAPF FNQMFSYLIV PFVLLMGIGP LSRWKNQAPS
ALYKQLLLAF GLSLSAAILV TANFEQTSYM AALGMVMGFW IVVTTIMEIH QRINADKKLS
QQPIFSALAK LTPSHWGMVV GHLGFAVSII GITLVSNYNQ EKHVRMAYGE TVQLMGYDFT
FKGVSNVKGP NYTGYQAHVV AKQDGEVVAS LEAEKRIYTV QRNVMTEAGI DSNIHRDLFV
ALGEQLDDGD WALRIYVKPF VNWIWAGAFI MGFGGILSIS DKRYRMQKLA SKKVAKDQTK
LNAPQVPASQ DAVESQS
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