| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3236 |
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| Symbol | |
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| ID | 4175013 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 3884106 |
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| End bp | 3886241 |
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| Gene Length | 2136 bp |
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| Protein Length | 711 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638056267 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_662796 |
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| Protein GI | 109899541 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.284362 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTTTCA AATACCCCAT TACTTTTCAC GGCTGTAATA GGCAGTTGAG TCTCGCACTC
ATCACGGCTT GCCTAGCAAG TTGCGCTAAC TTGAAAGGAG CAGGATATGA GGCAGCCCAA
CAAGATGACG TTATATTCAG CCAACCCATG CGCCCTCCGA AGACGCTACC AGATTCAGAT
GTATATGTGC CATTAGACAA GACGATCGAA GCTCAAGAAA CAATAGACGT TTTAACGGCC
CCAAATATCA ATTCGAACGT AGCTGCAGTA AAAGCACGTG AAGCTGTTAT GCCAGAATTG
AGCAGTGAGC TGGTAAATCG TCTCACCTTC AATAACATGC CAATCCCTGT ATACATTAAT
GAAATTTTTG GTAATCAATT AGGACTCAAT TTTGTTATAG AGCCCAGTTT GAAGAATGCT
GAAGACCTTG TCACCATGCG CCTCAATCAA GCGGTAGACC AAAAGAACTT ATACGAGCTC
GCTACTCAAA CATTAAAGTC TTACGGCGTC ACAACATCAA TTAAAAACAA CGCAATTTTA
TTCTCATTTT CTGAAAATGC TGGTAATGAA ACCCCATTAT TAATAAGTGG TCGCACTCTA
CCAGAAGTTC CGTCTAATAG TCGCCCACTT TTTTATGTAT ATCCTCTTCA GTCTGTTACC
ACGCCCATGA TCCGAAGCTG GCTTTCTCAG ATGTTTCCAA AAAAAGAGCT TGAGATAAAA
GAAGATATTT ATCAAAACGC TTTGATATTT ATTGGCCCGA ATCGGGCGAT AGAACAAGCC
GTAGCCGCAG CAAAATTGCT CGACAAACCC GCTATGCAAG ACATGTTTAG CCGTATTATT
CGACCTACGC TAAGCGACGT AAATGATTTA GCAAATAACC TAGAAAATGT ATTGAAAGCG
GAAGGCTATG CAGTTAGGCA ATCCGATGGG GCGTCAGCAA TTCGTCTATT AGCCTTGAGT
TCAGTTAATC AATTAGTGGT ATTCGCAAAA TCTGAAAACG TTTTAAACCA CGTTATAGAT
TGGGCTAAAA CGTTAGAAAC CGAGCAGCAT AAAAAAGTTG ATAAAGGTTT ATTCAGTTAC
CCTGTGCAGA GTACCCAAGC TACACATATT GTAGATATAT TAAATAGCTT GGGTGTTGCA
GACTATAAAA GTAATAATTC AGATAAAAGC AACACAACAA ACTCAAATAA CTCAGCTCCT
CGCACCTCCA ACTATCCCGA TGCACTCGAA GAAGATGTAA AAGGACGTTA CGCCGTAGAT
GAGCAATTAA ATACAATATT GTACAGTGGT AGTGGCAAAG ATTGGCTGCA GATATTGCCC
GTAATAAAGA AACTCGATAA GCCCGCTGCC TCTGTTATGG TTGAAGTAAT ACTTGCTGAA
GTTCAATTAA ACGATAGTGA AGACACTGGT GTGGAGTGGC TAGCAAACTC ATCATTAGGA
CGTTTTGGGA TTACAAGCAG CACCATAGGT GGTCTAGGGC TTGGCGCCAG CGGCTTTAAT
ATGACGTTAG ACAGTGCGGG ACAGACTCGA GCCATGTTGA ATCTGTTTTA TAAAAACGAG
AAGGCCAATA TACGTTCCAG GCCAAGGTTA ATGGTAAAAA GTGGTGGTGA AGCGTCGATC
GATGTGGGGA ATGAAATTCC GGTCATTACC TCCAACAGCC AAAGCACCAC AGATTCAGAT
GCCGTAGTAT TACAGACCAT TTCTTATCGT AAAACGGGCG TATTGTTAGA GGTAAAGCCA
ACTGTACACG CTTCAGGCTT TGTAGACATT GAAATTACTC AAGAGTTGAG TGAAGCCACT
GAAACCTCAT CGAGTGATAT CGATTCCCCT ACTATCTTGA ACAGAAAAAT CAGTACCACG
GTTACTTTAA GGGATGGAGG TTCAGTGCTA CTTGGTGGTC TTATTTCCTC CACGACAAGT
ACAGGTACTC AAGGGGTACC AATATTAGGT AGATTACCAA TGATTGGTAA GTTGTTCAGT
ACAGATTCAA ATGCCCAGGA TAGAACTGAG CTGATGATTA TGATTATTCC GTATATTCTA
AATTCACCTG ATGAAGCAGA ACAGTTAACA GATGAGCTAC AAAAAGCCAG AATTGATAAG
TTGTCTGATG GCATGGTAGG TAAAAAGCGG CCTTAA
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| Protein sequence | MFFKYPITFH GCNRQLSLAL ITACLASCAN LKGAGYEAAQ QDDVIFSQPM RPPKTLPDSD
VYVPLDKTIE AQETIDVLTA PNINSNVAAV KAREAVMPEL SSELVNRLTF NNMPIPVYIN
EIFGNQLGLN FVIEPSLKNA EDLVTMRLNQ AVDQKNLYEL ATQTLKSYGV TTSIKNNAIL
FSFSENAGNE TPLLISGRTL PEVPSNSRPL FYVYPLQSVT TPMIRSWLSQ MFPKKELEIK
EDIYQNALIF IGPNRAIEQA VAAAKLLDKP AMQDMFSRII RPTLSDVNDL ANNLENVLKA
EGYAVRQSDG ASAIRLLALS SVNQLVVFAK SENVLNHVID WAKTLETEQH KKVDKGLFSY
PVQSTQATHI VDILNSLGVA DYKSNNSDKS NTTNSNNSAP RTSNYPDALE EDVKGRYAVD
EQLNTILYSG SGKDWLQILP VIKKLDKPAA SVMVEVILAE VQLNDSEDTG VEWLANSSLG
RFGITSSTIG GLGLGASGFN MTLDSAGQTR AMLNLFYKNE KANIRSRPRL MVKSGGEASI
DVGNEIPVIT SNSQSTTDSD AVVLQTISYR KTGVLLEVKP TVHASGFVDI EITQELSEAT
ETSSSDIDSP TILNRKISTT VTLRDGGSVL LGGLISSTTS TGTQGVPILG RLPMIGKLFS
TDSNAQDRTE LMIMIIPYIL NSPDEAEQLT DELQKARIDK LSDGMVGKKR P
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