| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3175 |
|---|
| Symbol | ispH |
|---|
| ID | 4174952 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 3817973 |
|---|
| End bp | 3818917 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638056206 |
|---|
| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
|---|
| Protein accession | YP_662735 |
|---|
| Protein GI | 109899480 |
|---|
| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0761] Penicillin tolerance protein |
|---|
| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAATTC ATTTGGCTAA CCCACGAGGC TTCTGCGCCG GTGTTGACCG AGCCATCACC
ATCGTTGAAC GCGCGTTAGA AATTTTCTCA CCGCCTATTT ACGTGCGCCA CGAAGTGGTA
CATAACAAAT TCGTGGTGGA TGGTCTTAAA GAGCGCGGGG CGGTCTTTGT TGATGAGCTG
GTGGAAGTAC CTGATGACAG CATAGTGATT TTCTCGGCCC ACGGTGTGTC TCAAGCTGTA
CGCAACGAAG CGAGCTCTCG TGGCTTGAAG GTGTTTGATG CAACTTGTCC ACTTGTCACT
AAAGTGCATA TGGAAGTGAT GCGCGCTAGC TCAAAAGGCA CAGAATGTGT ACTTATTGGC
CATCAGGGCC ACCCCGAAGT GGAAGGCACC ATGGGTCAGT ACGACAATCA AGACGGCGGT
ATTTACTTAG TTGAGTCGGT CGATGACGTT GCCCGCCTCG AGGTAAAAAA TCCATCCGCG
TTGTACTACT GTAGTCAAAC CACTTTATCT GTGGATGATA CCGCTGACGT GATTGACGCG
TTGCGCGCCA AGTTCCCAGC AATTGAAGGG CCACGTAAAG ACGATATTTG TTACGCCACG
CAAAATCGCC AAGATTCGGT ACGTGAATTG TCAGCGGATT GCGATATATT GCTAGTGGTC
GGCGCGCAAA ATAGCTCTAA TTCAAATCGC TTACGAGAGT TGGCTGAAAA GATTGGGGCA
AAAGCGCATT TGATAGCAGA TGCTAATTGT ATTCAAAAAG AATGGTTGGC GAACGCTAAA
CATATTGGTG TGACCGCAGG TGCATCGGCC CCAGAGGTAT TAGTACAAGG TGTGGTCGAC
AGGTTAAAAG AGTGGGGTGC AAGCAGTGCT ACTGAGCGCC CTGGTCGCCT AGAAAACATC
GAGTTTGCAG TGCCTAAAGA GTTAAGAGTA AAACAAGTAA GCTAA
|
|---|
| Protein sequence | MQIHLANPRG FCAGVDRAIT IVERALEIFS PPIYVRHEVV HNKFVVDGLK ERGAVFVDEL
VEVPDDSIVI FSAHGVSQAV RNEASSRGLK VFDATCPLVT KVHMEVMRAS SKGTECVLIG
HQGHPEVEGT MGQYDNQDGG IYLVESVDDV ARLEVKNPSA LYYCSQTTLS VDDTADVIDA
LRAKFPAIEG PRKDDICYAT QNRQDSVREL SADCDILLVV GAQNSSNSNR LRELAEKIGA
KAHLIADANC IQKEWLANAK HIGVTAGASA PEVLVQGVVD RLKEWGASSA TERPGRLENI
EFAVPKELRV KQVS
|
|---|
| |