| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3173 |
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| Symbol | |
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| ID | 4174950 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3816221 |
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| End bp | 3817087 |
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| Gene Length | 867 bp |
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| Protein Length | 288 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056204 |
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| Product | prepilin-type cleavage/methylation-like |
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| Protein accession | YP_662733 |
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| Protein GI | 109899478 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4966] Tfp pilus assembly protein PilW |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCCTCATG GTCAAATGCA AACGGGCTTT AGCCTAATAG AGTTAATGAT TGCTTTAGCA
TTAGGCTTGA TTATCTCTGG TGCCATTATT CAAGTCATGG TGAGTTCGCG GGTGACGCAA
GGCGTGAATC AAGCCGTGAC GTCAGTTCAA GAGAATGGCC GATTTGTGAT TAGTCGTCTG
CGCACAGAAA TGCTCATGGC TGGGCGTTCA GATCTGCTCG CCTCAAGCCT TAACACAGCG
GTAGATGTGA TAGAAGAAGC TAGCTTTGTA CAAAATCATC CCGTTATTTT GCCAGGCGAT
TTTGTTGCTA TGCCTGCGCT TGGCGCAACC GATGGAAATG CAGGGGCAAA TGATCAGGTG
GTTATTGGTT TGCAAGGGAG TATTGACTGT CGTGGTAATC GTTTGGGCTA TGCGAACGGG
GAAGAATTCT TCGTAGTGAA TCATTATTTT GTACAGAACA ATACGTTACG TTGCCGAGGC
TTTGATGGGC GGGTGTTAAG GGCAATGCTG GCGAACAATG ATGAGGTTGA TAACAGCGCT
GAAATCATTC TTGATGATGT GTTCAGCTTT CAAGCGCTTT ATGGGATCAC GAATACTATT
TTGTCAGGGG ATAACTCGGG GCGTCCTATA CGTTATGTTA CAGCGGGGGA GCTCCCATTA
GTATTAGCGA GCGGCAGTCA GGTGGTAGCA CTGCGCTTAG GCGTGCTTTT ACGGGGGGAG
GGTGAAGTGA AGGTCAGCGC TCAAAAAGCG TTTAAATTAC TCAATGAAGC GCCCACCACA
CAAAGTGGTA CTGGTTTATT TAAACCCTTT GAAACCACGG TCACGCTGCG TAATGTCAAA
AATTACATGC GCAGTAGAAA GCTATGA
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| Protein sequence | MPHGQMQTGF SLIELMIALA LGLIISGAII QVMVSSRVTQ GVNQAVTSVQ ENGRFVISRL
RTEMLMAGRS DLLASSLNTA VDVIEEASFV QNHPVILPGD FVAMPALGAT DGNAGANDQV
VIGLQGSIDC RGNRLGYANG EEFFVVNHYF VQNNTLRCRG FDGRVLRAML ANNDEVDNSA
EIILDDVFSF QALYGITNTI LSGDNSGRPI RYVTAGELPL VLASGSQVVA LRLGVLLRGE
GEVKVSAQKA FKLLNEAPTT QSGTGLFKPF ETTVTLRNVK NYMRSRKL
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