| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3171 |
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| Symbol | |
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| ID | 4174948 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3811531 |
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| End bp | 3815625 |
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| Gene Length | 4095 bp |
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| Protein Length | 1364 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638056202 |
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| Product | Tfp pilus assembly protein tip-associated adhesin PilY1-like |
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| Protein accession | YP_662731 |
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| Protein GI | 109899476 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.495041 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGGAG GTATGATGTC CCGTTTCAAC ATGCTAATAC TATTATTAGG CTTGTGCCCA
TCGCTGGAAG CAGTAGCTGA CGATCTGGAA ATCTACTTTG GCGCGAGCAC TGAGCAGGTC
AAATACGACC CTAATGTGCT CTTTATCATG GATACTTCGG GGAGTATGAC AGCCGATGAC
GACACCAATG AGTCGCGTAT GCTTAGAGTA CAGAATGCCC TTAAAGAGAC CTTGCGTTCG
GTGACCAACG TAAATGCCGG TTTAATGCGC TTTTCGGATT ATGGCGGTCC CATACTTTAC
CCTGTGCGCC CCATAGATGA CACGGTTTCA CCGGAACTGA TTGTGCCTAT CGTTGTTGGG
ACTGACGATG CTACTGAGCG CAGCGGTGTG GTTAATCTTA ACAGTAGTAG TTTAACCCTA
TCTGCAGGAA CCGACACTGT GTTTACGGGG CTTCGCTACC AGAGCTTAAA CATTCCTCAA
GGAGCAACCA TCACAAGTGC GTACTTGCGC TTTACCTCCC GGGGTTTTGA TGCTTCAGCA
GCCCAAATCC AGATTAATGC GGAACTTACC CCCAATGCAT TGACTTACAC CAGTAACCAG
CAAGACATCA GCCAACGCAC CAAAACATCG AATTACGTGC TTTGGGAGCA AAATAACGAT
TGGCCCTCAG TTGGCGACAC AGTTGCGAGC ATTGATTTTA GTACAGTGGT ACAAGAAGTT
GTTGATCAAA GCGAGTGGTG TGGGGGCAAT GATCTTAATA TTATTCTGAC GACCCAAGGC
CTAAGTGCTG CCAGCAACCG GCTGGCTGAA AGCGTCGAAC AAGGAGGAGG CCTCTCACCG
CAACTAGTGG TGGTGTACGA TGAAACTACC GCTACAGGGT GTGTTACTGG AGACTTGACG
TATCAAATTG ACAGTCAATC TAACAATGCT GAAGAGCGCG GCAATGGATA TCAGTCAACG
GGTAGCGAAT TGACCTTCAA TGCCAGCAGT AACGATTACA TTGGTTTGCG CTTTCGTAAT
ATCGCTTTAC CTCAAGGCGC CGTGGTAAGC AATGCCTACC TTGAATTCAC TGCTTATCAA
AACAGCAGCA ATAACAGCGC ATCAATGACA ATTCGAGCGG CGAATGAAGC GGATCCAAAC
AGCTTTAATA ACTACCCCCG ATATTTGTTG AGAAATAAAG CCAAAACCGC ATCGGTCAAC
TGGAGTGGCA TTGAGCGATG GTATCGAAAT CGAGATTATC AGAGCCCGTC AGTTGCGAGT
ATTATTAATC AGTTGGTAGA GCGCAATGAT TGGCAGTTGG GCAATGACAT GGTATTTATC
TTGTCTGACT TTAGCAATAC GCGGGGGGCC TATACGTATG CCGAGCGCCC TTCGGGAGCC
GCTAAATTAG TCATCGAATT TCAAGGTCAA GCGACACCGG GCCAAACCTC AACCGTGCGC
GAGCACTTAG TCAGCAAGGT GGATGAGCTC AGTGCCAGTG GTTATACCCC AATCGTGGAT
ACTCTATATG AAGGGGTGAT GTATTACGGC GGGCTTGATG TGAACTATGG CCTGGCGCGG
GGCAATAATA GTGTATCGAA TACTGTTAGG CGTAACACAC GTGTCAGCCA CCGACTTTCA
TATTCAGGAC AAGATGCCAC GCTTCCCTCT GGCTGCGAAG AAGACAATTT AAGTTCATCT
AACTGCATCA CTCAACAAAT TCCTCAAGGG GCTCGCTATA TTTCGCCCAT TTCAGATCGC
CAATGCCAAG TGAATAATCA TATCGTTTTA CTCTCGGACG GCGAAGCGAA CAATAACCAC
AGTGTTGATG AGATTGAGAG CTTACTTAGC GCGTCGTGCA CAGGCAGTGG CGGTGAAAAA
TGCGGCTTAA GTTTAGTTCG AAACGTAGCA GATTCTGAGG GATCCGTGAT AGACAGCCGC
ATTATTACGC ACACCATAGG TTTTGCAGCG AATACCGAAG CCAATAGTTT CTTGAATCAA
ATAGCCTTAC AAGGGGGCGG TGGTTTTTAT CAAGCGGATA ACAGCCAAGA ATTATTAGGT
GCATTTCAAT CGATTTTGAA AACCGTTAAA GATGTGAACG CGACGTTTGT CTCCCCAGGG
GTTGCGGTGA ATCAATTAAA TCGCTTAACC CATAAAGACG AGTTGTACTT TGCGTTATTT
AAACCGTCTG AGGGTAGCAA CTGGCCTGGA AACCTGAAGA AATACAAAAT CGATGGAGAT
ACTATTTTAG ATAAAAATGG TTTGCCTGCT GTGGATGACG GCAATGGCTT TTTCTCTGAG
CAAGCCCATA GCTATTGGTC AGTGTTAACT GATGGTAATG ATGTTCGCCA AGGCGGGGCG
GCGAGTAAAA TGAGTTTGGC GCGTAATTTA TTTACGTTTT CAGCACCAGG GGCGTTCGCT
ACCACTGATA ACCGTATGCA TGAAAGTAAC AGTAATATCA CTGAGCAAGC CTTATCCATT
GATATGCTTG ATGATGCGAG CACCATACGT AGCAACTTAC TGAAGTGGGT AAGAGGCGTT
GACTTAAAAG ATGACGATGG TGATGGTGAT ACATCTGACG TGCGCCTACA AATGGGAGAT
CCTATTCATT CTCAGCCTGT CATTGTCAAT TATTCAGCTA CCGACAGCGC TATTTTTGTC
GCGACTAATC AGGGATTCTT GCATTCATTT GACGCCCAAA CGGGTAGTGA AAATTTTGCT
GTCATTCCTC AAGAGCTACT CGGCAATTTA TATGAATTTT ACCGTGAAAA CACTACGTCG
AATCATATCT ATGGTTTAGA CGGCGATCTG GTTCTACGTC ATTTTGATGA CAAGGTTTAT
CTTTATGTGG GCATGCGCCG CGGCGGTCGA AATTACTACA CTTTTGATAT TTCCAGTAAA
TCAAATCCTA CCTTAGTGCA TCAGGTTATC GGGGGAAGCA CGGGGTTTGA AAAGCTTGGG
CAATCATGGT CAAGGCCAAC CGTCACCAAA ATCAAAGTGG GCGAAACTAT ACGCAATGTA
CTTATTTTTG GTGGCGGTTA TGACGCAGAG CAAGACAACA AAATAGCTCG CAGCGCTGAC
AATGTCGGTA ACGCGGTGTT TATTGTAGAT GCTGACAGCG GGGAGTTAAT TTGGTCAGCC
AGCAACAGCG CTGCGGACTT ATTATTAAGC GACATGCAAT ACAGTATTCC TGCTCGTATA
TCGGTGATTG ACCGGGACAA TGATGGCTTA GCAGATCATA TGTATGTGGC CGATTCAGGA
GGACAACTGT TTCGCCTAGA CATACATAAT GGTTCGGGAC GTAGCAACTT AGTCAGCGGC
GGTTTACTCG CTGATTTAGG GGGGGATTTG GCAGAAGACA ATCGACGCTT TTACTATGCG
CCTGATGTTG CTCAAATAAG TGCCGTTGAT GAAAACTTTT ATGCTGTGGC AATCGGTTCT
GGTTATCGAG CACATCCATT GAATGCGCAG ATTCAAGACA GTTTTTATAT GTTAAAAGAC
TTTGGCATCT TCTCAACCGA TGAACAAGGT CATTATGGCT TACCTGAAAA TGCATTTACC
CGTGATGACT TATATGATGC GACGGCCCAT CTACTGACCT CATCAGATGA AACCGTGGTA
GAGGAGCAAA CTGCACTATT CGCCAGTAGG GCGGGTTGGC TGGTGGACCT TAGCACTGGA
GGCGAGAAAG TATTAGCCTC GCCGTTAATA TTAAATTATC AAGTGTTCTT CACTACCTAT
TTGCCTGCCA CAGCAAACGA CAGCCTATGC GCCCCTCCTA GTGGTAACAG CCGCGCATAT
TTAGTGGAAT TAATTAACGG TAATGCGGTG GTGGATCTGA ACAATGATAA TCAAACGACC
CATCAAGATC GATTTGCTGA TCTCAAGCAA ACGGGTATCG CGCCAGACAC CAAAATCCTT
ATTGAGGATA TTTTACAGCC TGTCGTGTGT TTAGGAACTG AGTGTGCGTC AGCGGTGATT
GAAGTAGATG AGCAAGGTGA TGAAGTCGTC TGTACTTCGG CCTTTGGCTG TTTAGCACAA
AACATTTATG GTCGCTTCGA GCGGATCCAA AAGAGCAGTT GGAAAACGGA AATTGAAAGA
CAAGAAGATG AATAA
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| Protein sequence | MTGGMMSRFN MLILLLGLCP SLEAVADDLE IYFGASTEQV KYDPNVLFIM DTSGSMTADD
DTNESRMLRV QNALKETLRS VTNVNAGLMR FSDYGGPILY PVRPIDDTVS PELIVPIVVG
TDDATERSGV VNLNSSSLTL SAGTDTVFTG LRYQSLNIPQ GATITSAYLR FTSRGFDASA
AQIQINAELT PNALTYTSNQ QDISQRTKTS NYVLWEQNND WPSVGDTVAS IDFSTVVQEV
VDQSEWCGGN DLNIILTTQG LSAASNRLAE SVEQGGGLSP QLVVVYDETT ATGCVTGDLT
YQIDSQSNNA EERGNGYQST GSELTFNASS NDYIGLRFRN IALPQGAVVS NAYLEFTAYQ
NSSNNSASMT IRAANEADPN SFNNYPRYLL RNKAKTASVN WSGIERWYRN RDYQSPSVAS
IINQLVERND WQLGNDMVFI LSDFSNTRGA YTYAERPSGA AKLVIEFQGQ ATPGQTSTVR
EHLVSKVDEL SASGYTPIVD TLYEGVMYYG GLDVNYGLAR GNNSVSNTVR RNTRVSHRLS
YSGQDATLPS GCEEDNLSSS NCITQQIPQG ARYISPISDR QCQVNNHIVL LSDGEANNNH
SVDEIESLLS ASCTGSGGEK CGLSLVRNVA DSEGSVIDSR IITHTIGFAA NTEANSFLNQ
IALQGGGGFY QADNSQELLG AFQSILKTVK DVNATFVSPG VAVNQLNRLT HKDELYFALF
KPSEGSNWPG NLKKYKIDGD TILDKNGLPA VDDGNGFFSE QAHSYWSVLT DGNDVRQGGA
ASKMSLARNL FTFSAPGAFA TTDNRMHESN SNITEQALSI DMLDDASTIR SNLLKWVRGV
DLKDDDGDGD TSDVRLQMGD PIHSQPVIVN YSATDSAIFV ATNQGFLHSF DAQTGSENFA
VIPQELLGNL YEFYRENTTS NHIYGLDGDL VLRHFDDKVY LYVGMRRGGR NYYTFDISSK
SNPTLVHQVI GGSTGFEKLG QSWSRPTVTK IKVGETIRNV LIFGGGYDAE QDNKIARSAD
NVGNAVFIVD ADSGELIWSA SNSAADLLLS DMQYSIPARI SVIDRDNDGL ADHMYVADSG
GQLFRLDIHN GSGRSNLVSG GLLADLGGDL AEDNRRFYYA PDVAQISAVD ENFYAVAIGS
GYRAHPLNAQ IQDSFYMLKD FGIFSTDEQG HYGLPENAFT RDDLYDATAH LLTSSDETVV
EEQTALFASR AGWLVDLSTG GEKVLASPLI LNYQVFFTTY LPATANDSLC APPSGNSRAY
LVELINGNAV VDLNNDNQTT HQDRFADLKQ TGIAPDTKIL IEDILQPVVC LGTECASAVI
EVDEQGDEVV CTSAFGCLAQ NIYGRFERIQ KSSWKTEIER QEDE
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