| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3170 |
|---|
| Symbol | |
|---|
| ID | 4174947 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 3811056 |
|---|
| End bp | 3811523 |
|---|
| Gene Length | 468 bp |
|---|
| Protein Length | 155 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638056201 |
|---|
| Product | prepilin-type cleavage/methylation |
|---|
| Protein accession | YP_662730 |
|---|
| Protein GI | 109899475 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4968] Tfp pilus assembly protein PilE |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.647515 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACACCC CCTCGAGAAT GGCGGCTAAT GGCGGCTTCT CTTTGATGGA GTTGATGATC
GCTGTTGCTA TTGTGGGGAT CGTTAGTACG GTTGCCTATC CAAGTTATCA AAGCTACATG
GTAGACAGCA AACGCAATGT CGCCCAAGCT GACCTAATGA CGTTTGCGGC GCAAATGGAG
CGTCATAAGT TAGCTAACTT TAGTTATGCA GGCGCGGCAA ATGAGGGAGC AGATACAGGA
GAACCAGCTA TTTTCGCCCA TCATTCACCC GCCAGTGAAT CAGCGGATAA TAAAGCGTAC
AACTTGACGA TTGATAGCCT GTCGGGTGGT GGTTCTGCCT ATCGAATTAA GGCGCAGCCT
TTGGTCGCTA GCCAAGGCGC ACTTTACTAT TATAGTGACG GGCGTAAAGC GTGGGATCAA
AATGCAGACG GAGCCATTTC TGCTTCTGAG TTCTGTTGGC GATGCTAA
|
|---|
| Protein sequence | MNTPSRMAAN GGFSLMELMI AVAIVGIVST VAYPSYQSYM VDSKRNVAQA DLMTFAAQME
RHKLANFSYA GAANEGADTG EPAIFAHHSP ASESADNKAY NLTIDSLSGG GSAYRIKAQP
LVASQGALYY YSDGRKAWDQ NADGAISASE FCWRC
|
|---|
| |