| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3169 |
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| Symbol | |
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| ID | 4174946 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 3810459 |
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| End bp | 3811031 |
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| Gene Length | 573 bp |
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| Protein Length | 190 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638056200 |
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| Product | prepilin-type cleavage/methylation |
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| Protein accession | YP_662729 |
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| Protein GI | 109899474 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4970] Tfp pilus assembly protein FimT |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGAAAAG TCTATCGTTA CCAAAATGAA AACCCCGCAG CGCAACGCGG TGTGACGCTT
ATCGAATTGA TGATAAGCGT CAGTATTGCC GTTATTCTCG CCGCGAGCGT AGCACCTAGT
TTACAGGCGA CCATTTCCCA CAACACAATT GCAGCGCAGA TGAATAAGAT CAGTGCTTTA
GCCCAGTATG CCAGAGGCCA CTCGATAGAT AATCAAATTG AAACAACCTT TTGTGCTACA
TCAGATTACG CAACTTGTTC TAATAATTGG GCGCTAGCCA AAATGGTCTT TGTTGATACC
AACGGGGATG GTGAACGCAA CGCAAACGAA TCATTGCTTG CATCCTTAAG TGTTGAGAGG
AACAACATTG CTGTTCAAGG TCCTCAAAAC CCCGTTGTTT TTACTATGAA CGGCGGAGCT
AATAATAATG CAGACATCCT ATTTTGCGGC GAAGAAACGT CATCTCACCG GGCATTGTTC
ATCAGTTTAC AAGGTAGAGT AAAAACTAGT CGAGACAGTG ACAACAACGG GGTTTATGAG
GGCAGAAACG GAGAGACTTT AAGCTGTTCT TAA
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| Protein sequence | MRKVYRYQNE NPAAQRGVTL IELMISVSIA VILAASVAPS LQATISHNTI AAQMNKISAL
AQYARGHSID NQIETTFCAT SDYATCSNNW ALAKMVFVDT NGDGERNANE SLLASLSVER
NNIAVQGPQN PVVFTMNGGA NNNADILFCG EETSSHRALF ISLQGRVKTS RDSDNNGVYE
GRNGETLSCS
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