| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3160 |
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| Symbol | |
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| ID | 4174937 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 3802899 |
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| End bp | 3803858 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638056191 |
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| Product | glycine cleavage T protein (aminomethyl transferase) |
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| Protein accession | YP_662720 |
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| Protein GI | 109899465 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0354] Predicted aminomethyltransferase related to GcvT |
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| TIGRFAM ID | [TIGR03317] folate-binding protein YgfZ |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00213 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGATAAACA CCATTGATAC CGCGGACACC ATCCCTGCAG ATTTTATTTG TCGCTTAGAC
GACTTGCATG TATTGAACAT CAGTGGTGAA GAGCGTATCA AATACTTGCA AGGCCAAGTC
ACCGCTGACA TGACAAAACT TAGCGCCCAT GAAGCTCTGT TTGGCAGCCA CTGTGACTTT
AAAGGCAAGA CTTGGAACAT TTTTTACGCC CTAGAGCACA ATGACTCTGT GCTTTTCGTA
AGCCATAAAG AAAGTGCCGC GGCGTCATTG CCCGAACTTA AAAAATACGG TGTGTTTGCT
AAAGTCGATT TCGTCGATGA GCCAACCCAG TGGGCATGTT TTGGTGGACA AGGGCAGCAG
CTCGAGGCTG TTATCAGTCA ATTATTCGGT AGTACACCGG CTGAACACTT GCAATCGCTT
AGCAATGCTA ACGGTGTGGT GTTAGCGCTA GGCTCAGAAA ACAAACGCTT CATGCTTGTA
CTTACGCCTG AAGGCCAAGC TCATTTAGCT GCACATGAAA CGCTAACGTA TGCTGATAAG
ACCCTATGGG AAGTGCTTGA TATAAAAGCG GGGGTTGCTG AATTGCGCAC TGCCACCAGT
AATGAATTTG TGCCGCAAAT GATGAACTTA CAAGCACTAG ATGGCATCAG TTTTAGCAAA
GGTTGTTACA TGGGCCAAGA AGTGGTGGCT CGAACTAAGT TTTTGGGCAA AAACAAACGA
GCGGCTTTCA TCCTTAAAGC TGACGAATCA GTAAATCTGC TGCCCGGCGA TAACCTTGAA
ATTCCGGTCG GCGAAAACTG GCGAAAGGGG GGGACAGTAT TACGCAGTGC AACCCTAAAC
AAAGAAACTT GGTTATTAGC CGTTGTGGCA AACGACACTG AAATTAATTC GATAATGCGG
TTGAAAGATC GACCTAATGC GGTATTTACC GTGCAATCTC TGCCATATTC ATTAGAATAA
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| Protein sequence | MINTIDTADT IPADFICRLD DLHVLNISGE ERIKYLQGQV TADMTKLSAH EALFGSHCDF
KGKTWNIFYA LEHNDSVLFV SHKESAAASL PELKKYGVFA KVDFVDEPTQ WACFGGQGQQ
LEAVISQLFG STPAEHLQSL SNANGVVLAL GSENKRFMLV LTPEGQAHLA AHETLTYADK
TLWEVLDIKA GVAELRTATS NEFVPQMMNL QALDGISFSK GCYMGQEVVA RTKFLGKNKR
AAFILKADES VNLLPGDNLE IPVGENWRKG GTVLRSATLN KETWLLAVVA NDTEINSIMR
LKDRPNAVFT VQSLPYSLE
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