| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3155 |
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| Symbol | |
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| ID | 4174932 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3798637 |
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| End bp | 3799215 |
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| Gene Length | 579 bp |
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| Protein Length | 192 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638056186 |
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| Product | RNA polymerase sigma factor RpoE |
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| Protein accession | YP_662715 |
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| Protein GI | 109899460 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000329481 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCGAGC AGTTAACAGA TCAACAAATA GTTGAAAAAG TGCAACGAGG AGACAAAGAC
GCATTCGGAT TGTTGGTGGT TAAGTACCAA CACAAGGTGT CTTATTTGGT ATCACGATAT
GTGAAGAACT CCGGTGACGT TGCTGACGTA GCACAAGAAG CCTTTATTAA AGCTTACCGT
GCATTACCTA ATTTTAGGGG CGATAGCGCA TTTTACACTT GGTTATACCG TATAGCCGTA
AACAGCGCTA AAAATTATTT AGTTTCGCAA GGTAGAAAGC CCCCTGCGAG CGATGTGGAC
GCAGAAGACG CGGATTTCTA TGACGGCAGT GATGCCTTGA AAGAGAATAA TTCGCCAGAA
AAAAGTTTAA TGTCGGATCA AATGGAAAAA TTGCTGTTTG ATACGATGGA TAAATTACCC
GAAGATTTAC GCATGGCCAT TAGCCTGCGG GAATTAGAAG GGCTAAGTTA TGAAGAGATT
GCTAATGTGA TGGATTGTCC TGTTGGGACT GTTCGATCAC GGATATTCAG AGCTCGTGAA
GCACTGGATA AGGTTATTCA ACCTTTGCTG CAACGTTAG
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| Protein sequence | MSEQLTDQQI VEKVQRGDKD AFGLLVVKYQ HKVSYLVSRY VKNSGDVADV AQEAFIKAYR
ALPNFRGDSA FYTWLYRIAV NSAKNYLVSQ GRKPPASDVD AEDADFYDGS DALKENNSPE
KSLMSDQMEK LLFDTMDKLP EDLRMAISLR ELEGLSYEEI ANVMDCPVGT VRSRIFRARE
ALDKVIQPLL QR
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