| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3154 |
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| Symbol | |
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| ID | 4174931 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3797898 |
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| End bp | 3798500 |
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| Gene Length | 603 bp |
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| Protein Length | 200 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638056185 |
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| Product | sigma-E factor negative regulatory protein |
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| Protein accession | YP_662714 |
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| Protein GI | 109899459 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3073] Negative regulator of sigma E activity |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000214803 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACGCAAA AGATTGAAAA TTTGTCTGCT CTGGTTGATG GTGAGTTACA CGACGAACAA
TTACTAGATG CAATTAAAAA TGATGCTGAG CTTGCCGACA AATGGCAAAA CTATCACTTA
ATACGCGACA GTTTGCGTAA AGAGATGACA GCACAAATCA ATGTTGATAT TGCTGCAAAT
GTAGCCGCCG CATTGGCATC AGAACCTGCC ATTCTTGCAC CGAAGAAAAC ATGGCGTGAT
CTACCTTTGG TTGGTTCTGT GGTACCCTTT GCTAAACAAG GTGGGCAAAT GGCCATTGCA
GCATCAGTTG CAGTAGCGAT GATAATCGGT GTACAGCAGT ACAACCAGAC TGATGTAGAG
CAACCATTTA ATTCTGCGCC TGCATTGTTG GGTATCCAAG GTGGTTTATC ACCGGTCAGC
TTAGAGCAGA CGCGTACTCT ACCTAGAGCT GATGCATCAG AGCAGCGCAG AGTCATTAAC
GCCTACTTGA ATGACCATAA GCAGCAATTA CGTTTTAAAG CCGCACCGGC CGAAGGCGAA
TCTGAAGTAG AGTTATATGA TACTGAACAG TCAAACAACG TTGAAAGCAT CTCACAAAAA
TAA
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| Protein sequence | MTQKIENLSA LVDGELHDEQ LLDAIKNDAE LADKWQNYHL IRDSLRKEMT AQINVDIAAN
VAAALASEPA ILAPKKTWRD LPLVGSVVPF AKQGGQMAIA ASVAVAMIIG VQQYNQTDVE
QPFNSAPALL GIQGGLSPVS LEQTRTLPRA DASEQRRVIN AYLNDHKQQL RFKAAPAEGE
SEVELYDTEQ SNNVESISQK
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