| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3149 |
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| Symbol | |
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| ID | 4174926 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3792781 |
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| End bp | 3793464 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638056180 |
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| Product | ribonuclease III |
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| Protein accession | YP_662709 |
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| Protein GI | 109899454 |
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| COG category | [K] Transcription |
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| COG ID | [COG0571] dsRNA-specific ribonuclease |
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| TIGRFAM ID | [TIGR02191] ribonuclease III, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000776488 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCAGTTGA TTGACCCTTA CAAACCTTTA TACACCAAAC TCGGTTATGA GTTTCAGGAC
CCAAAAAACC TAACGGTTGC TCTCACCCAT AGAAGCGTGG GTGCGAATCA TAACGAGCGC
TTAGAATTTT TAGGTGATGC CGTACTGGGC CTTGTTATCG CAAAAGCACT TTTTGAGCGT
TTTCCTAAAC AGCCTGAGGG CAATTTAACG CGAATGCGTT CCAGTTTAGT CAAAGGTGAT
ACTTTGGCAG AAGTGGCCAG AGAGTTTTCC TTAGGTGACT TGCTGTTACT TGGCCCAGGT
GAGCTTAAGA GCGGCGGCCA TCGTCGAGAT TCAATATTGG CTGATGCTGT CGAAGCTATT
ATAGGTGCTA TTTATCAAGA AGTGGGCATG CAGGGCTGCG AGCCATTAAT TTTAGCTTGG
TTTGCAAAGC GCATCGATGC ACTCAACCCA GATGCAACAC CCAAGGATGA TAAGACGCGG
TTACAGGAAT ATTTACAAGG TCGGCAGCTG CCTTTACCCG AATACGAAGT CATTGATATT
AGCGGCAAGT CCCATGACCA GACTTTTACG GTGCAATGCA CCGTATCAGG GTTGAGCAAA
CCTATTATTG GTCGTGGAAA AAGTAGACGT CGCGCCGAAC AGCGCACAGC AAAGCAAGCA
CTCGAGAATT TAAAAAATGT CTGA
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| Protein sequence | MQLIDPYKPL YTKLGYEFQD PKNLTVALTH RSVGANHNER LEFLGDAVLG LVIAKALFER
FPKQPEGNLT RMRSSLVKGD TLAEVAREFS LGDLLLLGPG ELKSGGHRRD SILADAVEAI
IGAIYQEVGM QGCEPLILAW FAKRIDALNP DATPKDDKTR LQEYLQGRQL PLPEYEVIDI
SGKSHDQTFT VQCTVSGLSK PIIGRGKSRR RAEQRTAKQA LENLKNV
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