Gene Patl_3142 details

Gene Information

• Locus tag: Patl_3142
• ID: 4174919
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: -
• Start bp: 3785993
• End bp: 3787873
• Gene Length: 1881 bp
• Protein Length: 626 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 638056173
• Product: hypothetical protein
• Protein accession: YP_662702
• Protein GI: 109899447
• COG category: [N] Cell motility
• COG ID: [COG3225] ABC-type uncharacterized transport system involved in gliding motility, auxiliary component

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTACTC GATTTATTAC TTGGTTAAGC ATGCTCTTTA TCGCAATACT GTTTTGCGCC 
TTAGTTTTAC TGAATAATCA GTTGCTTAGC GTATATCGTG TCGATTTAAC TGAGAACAAT 
GTTTATTCTT TGTCGCAAGG TAGTCAGCAA ATTTTAACGG AAATTGATGA GCCGTTGAAT 
CTGTACTTTT TCTTCTCCGA CAAAGCATCA AAGAATATGA CGACTTTGCG TAATTACGCG 
GTGCGGGTAC AAAGTTTACT TGAAGAATAT GCTGGGCGTT CCAACGGTAA AATTAAACTG 
CATATTCTTG ACCCCGAACC TTTTTCTGAA AAAGAGGATA GGGCAGATCA GTTTGGACTC 
ACAGGCGCAA ACATCGGTAC CGCCGGTGAA GCGATTTATT TAGGGTTGGG CGCAACAAAT 
GCGCTAGATG ACCAGCAAGT GATTGCGTTC TTTGATCCTC AGCAGGAGCG ATTTTTAGAG 
TACGAAATCA GTAAATTGAT TTATCAACTG GTTAATCCTA AGCAAGTTAA AGTGACGTTA 
TTAACTGATT TGCCAGTGGC AGGCGGACAA AATCCGATGA CGGGTGAGTT CGAACAACCG 
TGGACCTTTT ATACACAGTT ACAGCAACTA TATGTCGTCG ATAAAATCGG CAGCGATGCG 
ACAGAGTTAC CTAAAGGTAC CGATGTGTTA ATTGTCGCTC ACCCAAAAAA TTTAAGTGAC 
GAGTTATTAT ACGCCATCGA CCAATACACG ATGAAAGGTG GAAGAGCCCT GATTTTTGTT 
GATCCGCATA ATGAATCAGA TCAAATGAGT ATGCTTGTGG GGTCAGGCAT GGGAGCGAAC 
AGTTCGAACC TTTCTCGTTT GTTTAAAGCT TGGGGCGTTA ACTACGACGA GCAGCACGTC 
TTGCTCGATG CTTATGCAGG CTTAGATGTG CGCACCCAAA GCGGTGATGT TGCTAGGCAC 
TTCGGTTTTG TGGGCTTTAG CGCCAATGAA TTGAACGATA AAGATGTAAC CACTTCAAAT 
TTAGATTTGA TTAATGGGGC GTCTTTTGGG GTTTTCAAAA AAGGCGCTAG TACAGGCCAG 
CGCTGGGCTA CGCTTATTCA TTCAACTCAA AACTCAGATC TGATCGATAG TGCATTATAC 
GCACAGACAA GAGAGCCTTT AGCGTTAAGT CAGGAATATA CAAGCAGTAA TCAAGAGTAT 
GTGTTGGCCA CGAGGATCAC AGGAAATGCA AAGTCGGCTT TCGAGTTGCC GCCAGAGGGC 
ATTGAAAGCG AAGGAGCTTT ATCCAGCACA AGAGACTTAA ACGTAATGTT AGTGGGTGAT 
ACCGATTTAC TATCAGACAG ATTTTGGGTG CAGCAATCAT CATTTTTTGG TCAAACCATT 
ACCACGCCAT TTGCCAACAA CGGTGATTTC GTCACCAACG CGGTTGAGAA TCTTGCAGGC 
AGTGATGCAC TCATTAGCAT TCGAAGTCGA GGCACTTTTG CACGGCCTTT TGATAAGGTT 
GAGCAGCTCA AATTGGTCGC GGAGCAAAAA TTCCGAGAGC AGGAAAAAAT ACTTCAACAA 
CAGTTGGAAG AGGCCGAGTT GCAGTTGGCG CAATTGCAAG AGCAGCAAGG TGAGGGGGGG 
GCGTTAGTCA TTTCTTCGCA GCAGCAAAAA GCCATTGACG ATTTTATGAC TCAGAAAATT 
GAAATACGCA AATCTCTGAG AGAAGTGCGT CACCAGTTAG ATAAGGATAT TGAAACCTTG 
GGCAACCTTA TTAAGTTCAC CAACATTGTT ATTGCTCCAT TAGTGTTAGT GCTATTACTG 
ATGGGGGTTA GGCGTTTGTC ACGTAGTCGC TACAAGGCTA AAAATACGTC GCCCGTCGCA 
GGTGCTGGGG AGCCATCATG A 

 

Protein sequence

MSTRFITWLS MLFIAILFCA LVLLNNQLLS VYRVDLTENN VYSLSQGSQQ ILTEIDEPLN 
LYFFFSDKAS KNMTTLRNYA VRVQSLLEEY AGRSNGKIKL HILDPEPFSE KEDRADQFGL 
TGANIGTAGE AIYLGLGATN ALDDQQVIAF FDPQQERFLE YEISKLIYQL VNPKQVKVTL 
LTDLPVAGGQ NPMTGEFEQP WTFYTQLQQL YVVDKIGSDA TELPKGTDVL IVAHPKNLSD 
ELLYAIDQYT MKGGRALIFV DPHNESDQMS MLVGSGMGAN SSNLSRLFKA WGVNYDEQHV 
LLDAYAGLDV RTQSGDVARH FGFVGFSANE LNDKDVTTSN LDLINGASFG VFKKGASTGQ 
RWATLIHSTQ NSDLIDSALY AQTREPLALS QEYTSSNQEY VLATRITGNA KSAFELPPEG 
IESEGALSST RDLNVMLVGD TDLLSDRFWV QQSSFFGQTI TTPFANNGDF VTNAVENLAG 
SDALISIRSR GTFARPFDKV EQLKLVAEQK FREQEKILQQ QLEEAELQLA QLQEQQGEGG 
ALVISSQQQK AIDDFMTQKI EIRKSLREVR HQLDKDIETL GNLIKFTNIV IAPLVLVLLL 
MGVRRLSRSR YKAKNTSPVA GAGEPS