| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3136 |
|---|
| Symbol | clpP |
|---|
| ID | 4174909 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 3779722 |
|---|
| End bp | 3780360 |
|---|
| Gene Length | 639 bp |
|---|
| Protein Length | 212 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638056163 |
|---|
| Product | ATP-dependent Clp protease proteolytic subunit |
|---|
| Protein accession | YP_662696 |
|---|
| Protein GI | 109899441 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0740] Protease subunit of ATP-dependent Clp proteases |
|---|
| TIGRFAM ID | [TIGR00493] ATP-dependent Clp protease, proteolytic subunit ClpP |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000000023514 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGAATA CACCGTTTGA TCCTACAAAT GCATTAGTAC CTATGGTGGT TGAACAAACC
GCTAAAGGCG AGCGCTCTTA TGATATTTAT TCACGCTTGC TAAAAGAGAA CGTCATTTTC
ATGGTTGGCC AAGTCGAAGA CCATATGGCT AACCTTATCG TCGCACAGAT GTTATTTTTA
GAAGCTGAAA ATCCAGAAAA GGATATTTTC CTTTACATTA ATTCTCCTGG CGGTTCAGTG
ACAGCCGGTA TGGCGATTTA CGACACCATG AACTTTATTA AACCTGACGT CAGCACAGTG
TGTATCGGTC AGGCGGCTAG TATGGGCGCA TTTTTGTTGT CTGGTGGTGC GAAAGGTAAG
CGCTACTGTC TACCGAATGC CCGCGTTATG ATCCATCAGC CGTTGGGCGG ATTCCAAGGT
CAGGCGTCTG ATTTTGAAAT TCATGCCAAA GAAATCCTGT CAATTAAAGA GAAAATGAAT
CGCTTGATGG CAGCTCATAC GGGTCAAGAC TACGATAAAG TAGCTCGTGA TACCGACAGA
GATAATTTCT TAAGCGCGCA GGAATCTGTG GATTACGGTT TAGTGGATCA AGTACTCGCT
AACAGACCGG ATGCTAGCAA TAGCGACGCT AAGAAGTAA
|
|---|
| Protein sequence | MMNTPFDPTN ALVPMVVEQT AKGERSYDIY SRLLKENVIF MVGQVEDHMA NLIVAQMLFL
EAENPEKDIF LYINSPGGSV TAGMAIYDTM NFIKPDVSTV CIGQAASMGA FLLSGGAKGK
RYCLPNARVM IHQPLGGFQG QASDFEIHAK EILSIKEKMN RLMAAHTGQD YDKVARDTDR
DNFLSAQESV DYGLVDQVLA NRPDASNSDA KK
|
|---|
| |