Gene Patl_3129 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3129 
Symbol 
ID4174902 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp3771009 
End bp3772151 
Gene Length1143 bp 
Protein Length380 aa 
Translation table11 
GC content45% 
IMG OID638056156 
Productribosomal RNA large subunit methyltransferase N 
Protein accessionYP_662689 
Protein GI109899434 
COG category[R] General function prediction only 
COG ID[COG0820] Predicted Fe-S-cluster redox enzyme 
TIGRFAM ID[TIGR00048] radical SAM enzyme, Cfr family 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAGAAG TGATGTCAGC AAAACCGACT AAAATCAATT TACTCAACTT TAACCGAGCG 
GGTTTAAGAG AGTATTTTAG TTCGATTGGC GAAAAGCCAT TTCGTGCCGA CCAAATGATG
AAATGGATTT ATCAAGCTGG GGTGTCAGAC TTTGATCAAA TGACTAATTT GAACAAAGCG
TTACGTGAAA AGCTAAAAGC GCAATGTGAA GTCAAAGCGC CAGAAATCGC TTATCAGCAA
GGCGCAAGTG ATGGCACGAT TAAATTTGCG TTACGCCTAG AAGGCGGACA AGAAGTTGAA
ACTGTGTGGA TCCCTGATGA AGACCGCGCG ACCTTATGCG TGTCGTCACA AGTTGGCTGC
GCCCTAGAAT GCACTTTTTG CTCGACCGCT CAGCAAGGTT TTAACCGCAA TTTAAGTGTG
TCTGAAATTA TCGGTCAGGT GTGGCGCGTA GCAACGACCA TCGGTTTATC TAATGATAGT
GCCAAACGTC CCATTACTAA TGTGGTCATG ATGGGGATGG GCGAGCCGCT GTTAAACTTG
AAGAATGTGG TGCCGGCGAT GGATTTAATG CTTGACGATC TCGCATTTGG TTTATCAAAA
CGCCGTGTGA CCTTGAGTAC TTCAGGAGTG GTGCCTGCAC TTGATATGTT AGGCGATCAG
ATAGATGTAG CGCTGGCTAT TTCGCTTCAT GCCCCGGACG ACAAGTTGCG TGATGAAATT
GTGCCAATTA ACAAAAAATA TCCTATTCAA GAATTTTTAG CTGGGGTGCG CCGTTATCTA
GCTAAATCGA ATGCTAACCA AGGTAAAGTG ACAGTAGAGT ATGTCATGCT CAACGGTATC
AATGACAGTA CCGACCAAGC CCATGAACTG GCGAAAGTAT TGGCCGATAC GCCATGTAAA
ATTAACTTGA TTCCGTTTAA TCCTTATCCG GGCTCTCCTT ATAGTCGCTC GAGTAACTCA
CGCATTGATC GCTTCGCGAA AGTGCTTTCG AGTTACGGCT TGATGGTAGT CGTGCGTAAG
ACTCGAGGGG ATGATATTGA TGCAGCCTGT GGTCAACTTG TGGGCGACGT GGTTGATAGA
ACTAAACGAA TGTTGAAAAA ACAGATGAAG GGTGATGAAA TTTCGGTAAA AATGGAACAT
TGA
 
Protein sequence
MSEVMSAKPT KINLLNFNRA GLREYFSSIG EKPFRADQMM KWIYQAGVSD FDQMTNLNKA 
LREKLKAQCE VKAPEIAYQQ GASDGTIKFA LRLEGGQEVE TVWIPDEDRA TLCVSSQVGC
ALECTFCSTA QQGFNRNLSV SEIIGQVWRV ATTIGLSNDS AKRPITNVVM MGMGEPLLNL
KNVVPAMDLM LDDLAFGLSK RRVTLSTSGV VPALDMLGDQ IDVALAISLH APDDKLRDEI
VPINKKYPIQ EFLAGVRRYL AKSNANQGKV TVEYVMLNGI NDSTDQAHEL AKVLADTPCK
INLIPFNPYP GSPYSRSSNS RIDRFAKVLS SYGLMVVVRK TRGDDIDAAC GQLVGDVVDR
TKRMLKKQMK GDEISVKMEH