| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3125 |
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| Symbol | hisS |
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| ID | 4174898 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3766334 |
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| End bp | 3767614 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638056152 |
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| Product | histidyl-tRNA synthetase |
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| Protein accession | YP_662685 |
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| Protein GI | 109899430 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0124] Histidyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00442] histidyl-tRNA synthetase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0624144 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGTCTAAAC AAATACAGGC AATACGAGGC ATGAATGATT GCCTTCCTGA ACAGTCAGGC
TTATGGCAAT GGGCTGAAAA AGCGATCCGT GAAGTCGTTG CCAGTTATGG TTACCAAGAA
GTACGCACGC CCATCGTCGA AAGCACCGAT TTATTTAAGC GCTCAATTGG CGAAGTGACG
GATATTGTCG AAAAAGAAAT GTATACCTTT GCAGACCGCA ACGACGACAG CTTAACGTTG
CGTCCAGAAG GCACGGCCAG TGTTGTCCGC GCTGGAAACG AACATGGTTT GTTGTACAAC
CAACAGCAGC GATTGTGGTA TTTAGGGCCT ATGTTTCGTC ACGAGCGCCC ACAAAAGGGT
CGTTATCGAC AGTTTCATCA GTTCGGTGTA GAAGTATTCG GCCTAGCCGG TCCAGATATT
GACGCTGAAG TGATTGCGCT TAGCGCTCGA TTATGGAAAA AATTTGGAAT CTCTGAGCAG
GTAACCCTGG AGCTTAACTC GCTCGGTTCA AATGAAGCGC GTGAAACCTA CCGCAAAGCC
CTAGTTGAGT TCTTGCTCGC GAGAAAAGAA CACTTAGATG AAGACAGCCT ACGCCGCTTA
GAAAGTAACC CCTTGCGAGT GTTAGACAGT AAAAACCCAC AAGTACAAGC GGCTATTACA
GATGCGCCAA GCCTGATCGA CTACTTAGAT GCTGAATCTA AAGAACATTT TCACGCTTTA
TGTGAACGTT TAGACGCCTT AGGTATCCAA TACCGAGTTA ATCCGCGTTT GGTGCGAGGG
CTTGACTACT ACAACCGTAC GGTTTTTGAA TGGGTGACTG ATAGTTTAGG GGCCCAAGGT
ACTGTGTGTG CAGGTGGCCG CTACGATGGT CTTGTTGAAC AGCTCGGCGG TAAGTCCACT
CAAGGCGTTG GGTTTGCTAT CGGCATGGAG CGTTTAGTGT TAATGCTGCA AGCAAGCGGC
GCAGAAGAGT TTGTCGCGTC CCCAGTGGAT GTATACGTGA CGGCTATGGG AGATGAGGTC
GAGTTATATG CGCTTCAAAT TGCAGAAAGT TTGCGTGATG TTATGCCAAC CCTTAGAGTA
CAGACCCATT TTGGTGGTGG AAACTTTAAG AAGCAAATGA AACGTGCAGA TAAAAGTGCC
GCCCGAGTCG CCTTGGTGTT AGGTGAAACC GAGCAACAAG AAGAACAAGT CAGCATTAAG
TTTTTACGAG AAGACAAACC TCAAAGTCGC ATTGCTCGCT CAGAACTTGA GTCGACATTG
GTTGAGTTGT TTTCGCTTTA A
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| Protein sequence | MSKQIQAIRG MNDCLPEQSG LWQWAEKAIR EVVASYGYQE VRTPIVESTD LFKRSIGEVT
DIVEKEMYTF ADRNDDSLTL RPEGTASVVR AGNEHGLLYN QQQRLWYLGP MFRHERPQKG
RYRQFHQFGV EVFGLAGPDI DAEVIALSAR LWKKFGISEQ VTLELNSLGS NEARETYRKA
LVEFLLARKE HLDEDSLRRL ESNPLRVLDS KNPQVQAAIT DAPSLIDYLD AESKEHFHAL
CERLDALGIQ YRVNPRLVRG LDYYNRTVFE WVTDSLGAQG TVCAGGRYDG LVEQLGGKST
QGVGFAIGME RLVLMLQASG AEEFVASPVD VYVTAMGDEV ELYALQIAES LRDVMPTLRV
QTHFGGGNFK KQMKRADKSA ARVALVLGET EQQEEQVSIK FLREDKPQSR IARSELESTL
VELFSL
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