Gene Patl_3124 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3124 
Symbol 
ID4174897 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand- 
Start bp3765643 
End bp3766266 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content45% 
IMG OID638056151 
ProductTPR-like domain-containing protein 
Protein accessionYP_662684 
Protein GI109899429 
COG category[S] Function unknown 
COG ID[COG2976] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.304214 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAACATT ACGAAACAGA AGAACAACAA GTTGAAGCGA TTAAACGGTT TTGGAAAGAG 
AACGGTACCG CCATTATCGT TGGTGCAGTT CTTGGTTTAG GCGGCCTGTG GGGATGGCGT 
TATTACAACG ATGAACAAAT CGCTGCAAAA GAACAAGCAT CAGCGGCATT TGAAACGCAA 
ACCGCTGCTT TACAGGCACA GGATACCAAT TTTGGCCAAG CTAAAGCCTA TATTGATGAA 
AACAGCGACA CAGGTTACGC AGTGCTAATG GCGTTTCAAC TTGCGCAACA AGCAATTGAT 
CGCAAAGATC TGAACGAAGC AGAAAAACAA CTTTCATTTG CCGCCGCTAA TAGTGAAAGC 
GACGCGGTGA ACGCGTTAGC AAATTTACGT TTAGCGCGTG TGCAATTGGC TTTAGAGCAA 
CCTGAAAAAG CGCTTGCTAG TGTGGATAAA GTAACCACAA CGGCGTTTAA CGCTCAGCAA 
CAGGAAATTA AAGGCGACAT TTACGTTAAG CAAGGAATGT TTGATAAAGC ACGCAGTGCG 
TACAGTGCAG CAGTGGCGGC TAATAGTGCG AACAGCGTGG TTAAAATGAA GCTTGATAAT 
TTGGCTCTTG CGGCGAATGG GTAA
 
Protein sequence
MEHYETEEQQ VEAIKRFWKE NGTAIIVGAV LGLGGLWGWR YYNDEQIAAK EQASAAFETQ 
TAALQAQDTN FGQAKAYIDE NSDTGYAVLM AFQLAQQAID RKDLNEAEKQ LSFAAANSES 
DAVNALANLR LARVQLALEQ PEKALASVDK VTTTAFNAQQ QEIKGDIYVK QGMFDKARSA 
YSAAVAANSA NSVVKMKLDN LALAANG