| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3114 |
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| Symbol | |
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| ID | 4174887 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 3753171 |
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| End bp | 3754742 |
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| Gene Length | 1572 bp |
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| Protein Length | 523 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056141 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_662674 |
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| Protein GI | 109899419 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCTCGACA CGGGCGTGTT ACGCGTGGGT ACGATTTACG GCTTAACGAC CTATTACAAT
GGCCCTAATG GCCCTGAAGG GTTTGAATAT GAGTTAGCAG CCGGTTTCGC TGAGTACCTC
GGGGTAAAAC TAGAAATATT TCCTTATTAC ACAGTCAATG AGCTTTTCCC TCAACTCGAT
AACGCCCATT TAGATGTGAT TGCAGCAGGC ATTAACGTTA GCCCAGAACG TTACGCTCAA
TATCGTTTTG GCCCTGCTTA TCAGAATGTC AGCCAGAAAT TAGTTTTCAA GCAAGGGGAC
GTGCGCCCTC GCGAATTAGA CGATCTAACC GGTGATTTCA TGGTCGTTGC TGGTAGTGGC
CACAGTGAAA CCTTGCGCAA TTTTAAAGGG CAATACCCAG ATTTAAGCTG GCAAGAAACC
AACGATAAAG ATTCAGAGGA ACTACTTGAA GCAGTATTGG CGGACGAGCT GGACTACACA
GTGGTCGATT CTAACATTTT GGCTTTGATG CGTCGTCGGT ACCCTGAGCT AAGTATTGGG
TTTTCTTTGA GCCAATCACA AGGGATTGCT TGGGCCACCA GCCAAAAAAG TGACGATGCG
TTGCGTGCAG CTTTGATTGA ATATTTTGGG AAAATTCATC AAAACGGTAC CCTCGCCGCA
TTGGAAGACA AACATTTCGG CCATGTTCGC CAGTTCAACT ACGTAGACAC CCGTGATTTC
ATTCGCTCAG CCTCGAAGAA ACTACCGAAA TATCAGCCCT TATTTGAGCG ATATGCCGAT
GATTTAGACT GGCGTTTGTT AGCCGCTTTG AGCTACCAGG AGAGCCACTG GAACCCCAAA
GCAAAATCAG TCACAGGTGT TAGGGGCTTG ATGATGCTCA CCTTGAATAC AGCGAAAGAT
TTGGGAGTAA CGTCACGCCT CGATCCAGAA CAAAGTATTC GCGGTGGCTC AGAATATTTA
TCAACCTTAC TTACCCGCAT TCCGGACCGC ATTCCACACC CTGATAGATT ATGGTTTGCG
CTGGCCGCCT ACAATGTCGG CTTGGGGCAC TTAGAAGATG CTCGCGTGTT AACCGAACGC
CAAGGGGGCA ACCCGGATAT GTGGGTTGAT GTGAAAAAGC GCCTTCCCCA ATTAAGACAA
AAGCGCTATT ACAAGACCAC GCGCTACGGA TACGCTAGAG GTAATGAAGC CGTTATTTAT
GTAGATAATA TTCGTCGCTA CTATGACACC CTCGTTTGGC TCAATGAGCA ACAACCGGAG
CTTCTACCTA CGGAGCTTGA TGAGACAGTT CTTGATGAGA AAGAGCTTGA TGACACAGAA
CTAGACGGCG ATACAGTCGA TGAAACGGCA ATAGAAGCCC TGCTAGACGA TGACTCAACG
TCAGAAAGAG GGTCGAGTGA GCGAGGCGAG GTAGGACAGA CTGAAGCAAA AATCATAGAA
ACAACTGACG AAGCAAAAAA TGTAAACGCT GATACAGAAG GCGCAGAGGA CGTTGATGAT
ACTGAAGATA TTAACAGCGC TGAGGGCGCT ATTAATGCTG AAGGCTCCGG CAACACAGAA
AATGACCTAT AA
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| Protein sequence | MLDTGVLRVG TIYGLTTYYN GPNGPEGFEY ELAAGFAEYL GVKLEIFPYY TVNELFPQLD
NAHLDVIAAG INVSPERYAQ YRFGPAYQNV SQKLVFKQGD VRPRELDDLT GDFMVVAGSG
HSETLRNFKG QYPDLSWQET NDKDSEELLE AVLADELDYT VVDSNILALM RRRYPELSIG
FSLSQSQGIA WATSQKSDDA LRAALIEYFG KIHQNGTLAA LEDKHFGHVR QFNYVDTRDF
IRSASKKLPK YQPLFERYAD DLDWRLLAAL SYQESHWNPK AKSVTGVRGL MMLTLNTAKD
LGVTSRLDPE QSIRGGSEYL STLLTRIPDR IPHPDRLWFA LAAYNVGLGH LEDARVLTER
QGGNPDMWVD VKKRLPQLRQ KRYYKTTRYG YARGNEAVIY VDNIRRYYDT LVWLNEQQPE
LLPTELDETV LDEKELDDTE LDGDTVDETA IEALLDDDST SERGSSERGE VGQTEAKIIE
TTDEAKNVNA DTEGAEDVDD TEDINSAEGA INAEGSGNTE NDL
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