| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3080 |
|---|
| Symbol | |
|---|
| ID | 4174852 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 3713984 |
|---|
| End bp | 3714982 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638056106 |
|---|
| Product | polysaccharide biosynthesis protein CapD |
|---|
| Protein accession | YP_662640 |
|---|
| Protein GI | 109899385 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
|---|
| TIGRFAM ID | [TIGR03589] UDP-N-acetylglucosamine 4,6-dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAATA ATAAATCAAT CCTTATTACT GGCGGTACCG GCTCATTTGG TAAGCGTTTC
GTTTCCTTTA TTTTAAAAAA TTACCAACCG CAAAAGCTCA TTATTTATTC TCGAGATGAA
TTAAAGCAGT TTGAAATGCA GCAAGTTTTT GATGCGCCCT GCATGCGCTA TTTTATCGGT
GATGTACGTG ACAAAGAGCG TATGATTTCC GCCATGCGGG ATGTGGACCT CGTGGTCCAT
GCCGCAGCCC TAAAGCAAGT GCCAGCGGCT GAGTATAATC CCAATGAATG TATCAAAACG
AATATAAACG GCGCACAAAA CGTGATTGAT GCAGCAATAG CAGCTAACGT AAGTCGCGTC
ATCGCTTTGT CCACCGACAA AGCAGCCAAT CCAGTTAATT TGTATGGAGC AACTAAGTTA
GCGTCGGACA AGTTGTTTGT GGCGGCAAAT AATATTTCTG GGGCTAAGGG CCCAAGGTTC
TCTGTGGTTC GTTATGGCAA TGTGGTTGGA TCTCGTGGCT CGGTAGTACC GTTTTATCGC
TCTTTGATGG AGCAAGGTAA ATCTAATTTA CCAGTTACCC ATGCAGAAAT GACACGCTTT
TGGATCACAT TAGATGAAGG CGTTGAGTTC GTGGTAAAGA ACTTTCAGCG AATGCAAGGT
GGCGAAATTT TTGTTCCTAA AATTCCATCT GTCGCTATTC TCGACTTGGT AGAATCTATG
AGCGGCACCC GTGAACATGA GCTTGTTGGT ATTCGCCCTG GTGAAAAACT GCATGAGGTG
ATGGTGCCGG AAGAGATGGC GCATCATTCA TTGGAGTTCG ATGATCATTA TGTAATAACA
CCTGCCATCG TTTTTTTCGA AAAAAATATT GACTATAAGC GCAACAAGCT CGGTGAGACA
GGTAAAGCGG TAGAAGATAA ATTTGAGTAT CATTCCGGCA CTAACCCTCA TTTCTTATCT
GTGGAAGAGC TACGGACCCT AGATAGTACG ACGGATTAG
|
|---|
| Protein sequence | MFNNKSILIT GGTGSFGKRF VSFILKNYQP QKLIIYSRDE LKQFEMQQVF DAPCMRYFIG
DVRDKERMIS AMRDVDLVVH AAALKQVPAA EYNPNECIKT NINGAQNVID AAIAANVSRV
IALSTDKAAN PVNLYGATKL ASDKLFVAAN NISGAKGPRF SVVRYGNVVG SRGSVVPFYR
SLMEQGKSNL PVTHAEMTRF WITLDEGVEF VVKNFQRMQG GEIFVPKIPS VAILDLVESM
SGTREHELVG IRPGEKLHEV MVPEEMAHHS LEFDDHYVIT PAIVFFEKNI DYKRNKLGET
GKAVEDKFEY HSGTNPHFLS VEELRTLDST TD
|
|---|
| |