| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3079 |
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| Symbol | |
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| ID | 4174851 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3712839 |
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| End bp | 3713975 |
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| Gene Length | 1137 bp |
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| Protein Length | 378 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638056105 |
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| Product | DegT/DnrJ/EryC1/StrS aminotransferase |
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| Protein accession | YP_662639 |
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| Protein GI | 109899384 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis |
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| TIGRFAM ID | [TIGR03588] UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTTGCCAT ATGGTTGTCA TACTATTGAT CAGGACGATA TAGATGCTGT CGTCGATGTA
CTTCAAAATC AATTTTTAAC GCAAGGGTCA ACGGTCCCAG CTTTCGAACG TGCCCTTTGT
CAATATACTC AGGCAAGCTA TGCCTTAGCG GTAAACAGTG GTACATCGGG TTTACATGTG
GCTTGTTTAG CGGCAGGGGT TGACTCGTCA GACGTCGTTT GGACGGTGCC CAACTCCTTT
GTTGCTTCAG CCAACTGTGC TCGCTACTGC GGGGCCGACG TTGATTTTGT AGACATTGAC
CCGCTAACAC GGAACATCTC TATTGAAGGC CTCAAAAATA AACTGGCTAA CTGTAGCAAG
TTCCCTAAGG TATTGATCGT GGTGCACTTT GCGGGGGAGT CTTGTGATAT GCAAGCGATC
TCCGCACTAA CAAGCATTCA CAATATTACG CTTATTGAAG ATGCGGCACA CGCATTAGGT
GCGACATATC AAGATAAGCC GGTCGGCTGT TGCCAATACA GTGATATGAC TGTTTTGAGC
TTTCACCCTG TTAAGTCTAT TACCTCGGCT GAAGGCGGAG CAATAACCAC TAACGACGAG
GAACTGCTAA AGCGACTTAC GCTGTTCGCA AAGCATGGTA TCACTCGGGA GCTATCCACT
TTTGAAACTC AAGATCAAGG CGCTTGGTAT TACGAGCAGC AAGCGCTTGG TTACAATTAC
CGTATGAGTG ACATTCATGG TGCATTGGGT TTATCCCAGT TAAATAAGTT AGATGCGTTT
ATTCAACACA GACGTGAAAA AGCGGCTGTG TATTTAACAG CACTACGTCC GTTACCTATT
AAGTTGCCAA GTGAGGAAAC GCTTGCCACC AGTGCATGGC ACCTTTTTAT GATTGAGCTT
ACAACGCATG ACCGAAAGGC AGTGTTTGAC GCGCTTAGAA GTCGGGGGAT TGGTGTTAAC
GTACACTACA TTCCCATTCA TCTTCAGCCT TATTATCAAA AGCTTGGTTT CCAAAAAGGT
GATTTTCCTT TGTCTGAGGC CTTTTATAAA CATGCTATTA CATTACCGTT GTTTCCGACA
ATGTCAGCTT CACAGCAGCA GCATGTGATT GATACACTCA TTGATGTTTT ACAGTGA
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| Protein sequence | MLPYGCHTID QDDIDAVVDV LQNQFLTQGS TVPAFERALC QYTQASYALA VNSGTSGLHV
ACLAAGVDSS DVVWTVPNSF VASANCARYC GADVDFVDID PLTRNISIEG LKNKLANCSK
FPKVLIVVHF AGESCDMQAI SALTSIHNIT LIEDAAHALG ATYQDKPVGC CQYSDMTVLS
FHPVKSITSA EGGAITTNDE ELLKRLTLFA KHGITRELST FETQDQGAWY YEQQALGYNY
RMSDIHGALG LSQLNKLDAF IQHRREKAAV YLTALRPLPI KLPSEETLAT SAWHLFMIEL
TTHDRKAVFD ALRSRGIGVN VHYIPIHLQP YYQKLGFQKG DFPLSEAFYK HAITLPLFPT
MSASQQQHVI DTLIDVLQ
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