Gene Patl_3061 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3061 
Symbol 
ID4174833 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand- 
Start bp3695307 
End bp3695870 
Gene Length564 bp 
Protein Length187 aa 
Translation table11 
GC content44% 
IMG OID638056087 
ProductdTDP-4-dehydrorhamnose 3,5-epimerase 
Protein accessionYP_662621 
Protein GI109899366 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 
TIGRFAM ID[TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGTCGAT TTAGCCTGAC CGATTTGCCA CTAGCAGGGC TTAAAAAAGT AAAAAGGCAA 
AAGCTTGGTG ATGAAAGAGG TTTCTTCGCT CGGGTGTTTT GTGCCGCTGA GTTATCGATA 
TGCGGTTGGC AGGGGCCGAT TGCACAAATC AATCATACTT ATACAGCTAA AAAAGGCAGC 
GTTCGGGGCT TACATTTTCA ACTTCCTCCC TTTAGTGAAA TAAAATTGGT CAGTTGTTTA 
AAGGGGCAGG TGTGGGATGT AGTAGTGGAT CTTAGAGCTG ATTCGGCGAC TTTTTTGCAT 
TGGCATGCAG AAAAATTAAC CAGTGATAAC GGCATCGGGC TATTAATCCC AGAAGGTTTT 
GCCCATGGTT TTCAAACCTT GTGCGACGAT GTTGAATTAC TGTATTGCCA TTCACAGGCT 
TACCAACCCA AAGCAGAGGC TGGCCTTAAC CTATTAGATC CACGTTTGTC TATTAATTGG 
CCATTGCCTA TTAGTCAGTG TTCAGAGCGA GATCAAGCAT TTTCCCTTCT AGATGCTGAG 
TATGCAGGAG TGGATCTAAA ATGA
 
Protein sequence
MSRFSLTDLP LAGLKKVKRQ KLGDERGFFA RVFCAAELSI CGWQGPIAQI NHTYTAKKGS 
VRGLHFQLPP FSEIKLVSCL KGQVWDVVVD LRADSATFLH WHAEKLTSDN GIGLLIPEGF 
AHGFQTLCDD VELLYCHSQA YQPKAEAGLN LLDPRLSINW PLPISQCSER DQAFSLLDAE 
YAGVDLK