Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3051 |
Symbol | |
ID | 4174823 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 3682648 |
End bp | 3684081 |
Gene Length | 1434 bp |
Protein Length | 477 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638056077 |
Product | sigma-54 dependent trancsriptional regulator |
Protein accession | YP_662611 |
Protein GI | 109899356 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAATA TTCTGATTAT CAGTGGGCGA CCCACGCTCG GGCATAATCT GAACACCATA TTGACCTTTC TCGGTGAAAG CAGTACCGCT ATCGCATTCG AGCAAGCTGT CAGTACTCTC AAATCTCATC CTGTTTTTGA TGCTGTATTG ATTGATGCTC TGAATATTGA TTTAGCGGGT GAGCTGTGTG ATAAATTTCC CCAGCAACCT TTTATTCTAG TTGATAGTAA AGATCCAAAT TTTAAGTCCG GTGCCAACCG AGTAGGCACT GTTGATGGGG CAGTGACTTA CCCGTTACTT ACGCAAATGT TACATCGTTG CCAAGAGCAT CGTCGGATGC AACCCAACCG CAACACCACA CCGCAAAATA AAACAAAACT GTTTCGCAGT TTAGTGGGCA AAAGCAATCA AATTCAAAGT GTAAGGCACC TTATTGAGCA AGTCGCACCG ACTGACGCAA ACGTACTTAT TCTCGGTGAA TCAGGAACCG GCAAGGAAGT CATTGCTCGT AACGTACATT ATTTGTCGAA GCGTGGTACA AGCCCTTTCA TTCCAGTTAA TTGTGGGGCC ATACCTGGCG AGTTGCTTGA AAGTGAACTG TTCGGTCATG AGAAAGGAGC ATTTACTGGC GCCGTGAGTT CTCGCAAAGG CCGTTTTGAA TTAGCCGAAG GCGGCACCCT ATTTTTAGAT GAAATCGGCG ACATGCCTTT GCAAATGCAA GTGAAATTGT TACGTGTGCT GCAAGAACGC ACTTATGAAC GGGTAGGGGG AATGAAGCCT ATTCGTTGTG ACGTTCGGGT CGTTGCTGCA ACACACAGAA ATCTCGAAGA AATGATTGAG CAAGGGCGCT TTCGAGAGGA TTTATATTAT CGCTTGAACG TTTTTCCTAT CGATAGCCCA GCATTGCGCG AGCGGCACGA AGATATTCCT CTTCTTTTAC AGGAACTCGT TTCACGCATG GAGCGAGAAA ACGCTCAGAT CAAATTTACC GAAAATGCGA TGAAATCGCT CATGGAGCAT AGTTGGGCAG GTAACGTTAG AGAGCTATCT AACCTTGTTG AGCGCCTGAT GATTTTATAC CCCAACCAAT TAATTGATGT GGGGGATTTA CCACATAAAT ACCAGCATTT AGATGCTGAT GATTATGAGC CTGACTACCC AGAAGAGTTA CTCGAGCGCG AAGCGCTTAA CGCCTTGTTT TCAGCTGACG CAGAAAGTGA CAGTGACGAA AACTACGACG AGAGCAATAA TTCTACTGAA TTACCTCCAG AGGGGATTAA CCTCAAAGAG TATATTTCAG AAATGGAAGT CAGCTTAATC TCCCAAGCAT TGGAGCAGCA GGACTGGGTC GTTGCTCGCT CAGCCGAAGT GCTAGGAATG CGCCGTACCA CCTTAGTAGA AAAGATGCGG AAATACGATA TTAGCAAAGC CTAG
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Protein sequence | MSNILIISGR PTLGHNLNTI LTFLGESSTA IAFEQAVSTL KSHPVFDAVL IDALNIDLAG ELCDKFPQQP FILVDSKDPN FKSGANRVGT VDGAVTYPLL TQMLHRCQEH RRMQPNRNTT PQNKTKLFRS LVGKSNQIQS VRHLIEQVAP TDANVLILGE SGTGKEVIAR NVHYLSKRGT SPFIPVNCGA IPGELLESEL FGHEKGAFTG AVSSRKGRFE LAEGGTLFLD EIGDMPLQMQ VKLLRVLQER TYERVGGMKP IRCDVRVVAA THRNLEEMIE QGRFREDLYY RLNVFPIDSP ALRERHEDIP LLLQELVSRM ERENAQIKFT ENAMKSLMEH SWAGNVRELS NLVERLMILY PNQLIDVGDL PHKYQHLDAD DYEPDYPEEL LEREALNALF SADAESDSDE NYDESNNSTE LPPEGINLKE YISEMEVSLI SQALEQQDWV VARSAEVLGM RRTTLVEKMR KYDISKA
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