Gene Patl_3051 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3051 
Symbol 
ID4174823 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp3682648 
End bp3684081 
Gene Length1434 bp 
Protein Length477 aa 
Translation table11 
GC content45% 
IMG OID638056077 
Productsigma-54 dependent trancsriptional regulator 
Protein accessionYP_662611 
Protein GI109899356 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTAATA TTCTGATTAT CAGTGGGCGA CCCACGCTCG GGCATAATCT GAACACCATA 
TTGACCTTTC TCGGTGAAAG CAGTACCGCT ATCGCATTCG AGCAAGCTGT CAGTACTCTC
AAATCTCATC CTGTTTTTGA TGCTGTATTG ATTGATGCTC TGAATATTGA TTTAGCGGGT
GAGCTGTGTG ATAAATTTCC CCAGCAACCT TTTATTCTAG TTGATAGTAA AGATCCAAAT
TTTAAGTCCG GTGCCAACCG AGTAGGCACT GTTGATGGGG CAGTGACTTA CCCGTTACTT
ACGCAAATGT TACATCGTTG CCAAGAGCAT CGTCGGATGC AACCCAACCG CAACACCACA
CCGCAAAATA AAACAAAACT GTTTCGCAGT TTAGTGGGCA AAAGCAATCA AATTCAAAGT
GTAAGGCACC TTATTGAGCA AGTCGCACCG ACTGACGCAA ACGTACTTAT TCTCGGTGAA
TCAGGAACCG GCAAGGAAGT CATTGCTCGT AACGTACATT ATTTGTCGAA GCGTGGTACA
AGCCCTTTCA TTCCAGTTAA TTGTGGGGCC ATACCTGGCG AGTTGCTTGA AAGTGAACTG
TTCGGTCATG AGAAAGGAGC ATTTACTGGC GCCGTGAGTT CTCGCAAAGG CCGTTTTGAA
TTAGCCGAAG GCGGCACCCT ATTTTTAGAT GAAATCGGCG ACATGCCTTT GCAAATGCAA
GTGAAATTGT TACGTGTGCT GCAAGAACGC ACTTATGAAC GGGTAGGGGG AATGAAGCCT
ATTCGTTGTG ACGTTCGGGT CGTTGCTGCA ACACACAGAA ATCTCGAAGA AATGATTGAG
CAAGGGCGCT TTCGAGAGGA TTTATATTAT CGCTTGAACG TTTTTCCTAT CGATAGCCCA
GCATTGCGCG AGCGGCACGA AGATATTCCT CTTCTTTTAC AGGAACTCGT TTCACGCATG
GAGCGAGAAA ACGCTCAGAT CAAATTTACC GAAAATGCGA TGAAATCGCT CATGGAGCAT
AGTTGGGCAG GTAACGTTAG AGAGCTATCT AACCTTGTTG AGCGCCTGAT GATTTTATAC
CCCAACCAAT TAATTGATGT GGGGGATTTA CCACATAAAT ACCAGCATTT AGATGCTGAT
GATTATGAGC CTGACTACCC AGAAGAGTTA CTCGAGCGCG AAGCGCTTAA CGCCTTGTTT
TCAGCTGACG CAGAAAGTGA CAGTGACGAA AACTACGACG AGAGCAATAA TTCTACTGAA
TTACCTCCAG AGGGGATTAA CCTCAAAGAG TATATTTCAG AAATGGAAGT CAGCTTAATC
TCCCAAGCAT TGGAGCAGCA GGACTGGGTC GTTGCTCGCT CAGCCGAAGT GCTAGGAATG
CGCCGTACCA CCTTAGTAGA AAAGATGCGG AAATACGATA TTAGCAAAGC CTAG
 
Protein sequence
MSNILIISGR PTLGHNLNTI LTFLGESSTA IAFEQAVSTL KSHPVFDAVL IDALNIDLAG 
ELCDKFPQQP FILVDSKDPN FKSGANRVGT VDGAVTYPLL TQMLHRCQEH RRMQPNRNTT
PQNKTKLFRS LVGKSNQIQS VRHLIEQVAP TDANVLILGE SGTGKEVIAR NVHYLSKRGT
SPFIPVNCGA IPGELLESEL FGHEKGAFTG AVSSRKGRFE LAEGGTLFLD EIGDMPLQMQ
VKLLRVLQER TYERVGGMKP IRCDVRVVAA THRNLEEMIE QGRFREDLYY RLNVFPIDSP
ALRERHEDIP LLLQELVSRM ERENAQIKFT ENAMKSLMEH SWAGNVRELS NLVERLMILY
PNQLIDVGDL PHKYQHLDAD DYEPDYPEEL LEREALNALF SADAESDSDE NYDESNNSTE
LPPEGINLKE YISEMEVSLI SQALEQQDWV VARSAEVLGM RRTTLVEKMR KYDISKA