| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3015 |
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| Symbol | alaS |
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| ID | 4174788 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3643121 |
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| End bp | 3645718 |
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| Gene Length | 2598 bp |
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| Protein Length | 865 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638056043 |
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| Product | alanyl-tRNA synthetase |
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| Protein accession | YP_662577 |
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| Protein GI | 109899322 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0013] Alanyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.071786 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAAGA GCACAGCGCA AATTCGACAA GCCTTTTTAA ACTTTTTTGC AGACAAAGGG
CATCAAAAAG TTTCTAGTTC GTCTCTGGTT CCAAGCGACG ATCCCACATT GTTATTTACC
AACGCGGGTA TGAACCAATT CAAAGATGTG TTTTTAGGCA CTGAACAACG CAAGTACACA
CGTGCAACCT CATCTCAACG GTGTGTAAGA GCGGGTGGTA AACATAATGA TTTAGAAAAT
GTAGGCTACA CGGCGCGTCA TCACACCTTT TTTGAAATGC TAGGTAACTT CAGTTTTGGT
GATTATTTCA AGCACCAAGC CATTGGTTAT GCATGGTCTT TTTTAACCGA AGTATTGAAA
CTGCCGAAAG ACAAGTTATT AGTCACTGTT TATTCAGAGG ACGACGAGGC GTTTGACATT
TGGCACAACG ACATTGGCAT TCCTAAAGAA AAAATTATTC GTATTGCCAC CTCAGATAAT
TTCTGGTCAA TGGGTGACAC CGGGCCTTGT GGGCCTTGTT CTGAAATATT TTATGATCAC
GGTGAACACA TCTGGGGTGG TCCTCCTGGC TCCCCGGAGG AAGATGGCGA TCGTTTTATC
GAAATCTGGA ACTTGGTCTT CATGCAGTTC AATCGTCAAG CCAATGGTGA CATGTTGCCT
TTGCCTAAAC CCTCTATCGA TACCGGGATG GGGTTAGAAC GTATTTCGGC TATTATACAA
AATGTGCACA GCAACTATGA AATTGATATT TTCCAAAACT TGATAAAAGC CACTGCAAAG
ATTGTTGGGG TAACAAGCCT TGAAGACAAA TCGTTGCGCG TGGTGGCGGA TCACATTCGC
TCCTGTAGTT TCCTTATTTC AGACGGCGTC ATGCCATCGA ATGAGGGGCG AGGGTATGTA
CTGCGTCGTA TTATCCGCCG CGCGGTGCGC CACGGTAATA AGCTGGGTGC AAACGGCGTG
TTTTTCTATA AATTAGTAGC AGCATTGGCC ACAGAGATGG GCGACGCGTA TCCAGAGCTA
AACGAACAAC GTGCAGTGAT TGAAAAAGTG CTTCGAGTGG AAGAGGAGCA GTTTTCCCGT
ACGCTTGAGC GCGGAATGCT AATTCTAAAC GATGCATTGA ACGAGCTTGA AGGTAAAGTG
GTACCGGGTG ATGTGGTCTT CAAGCTCTAT GATACCTATG GCTTCCCAGC AGATTTGACC
AATGATGTAG CCCGAGAGAA AGGTTTGAGC ATTGATGAGG AAGGGTTTGA GCAGGCGATG
GCTGAGCAGC GAAAACGAGC CCAAAAAGCC AGTAACTTTG ACGTGGATTA CAACGAGCAA
CTTCGCAGCG ATTTAGAGTC AATCTTTGTG GGATATGAAC ATGAAGATAA CACTGCAACA
ATCACTGAGC TGTTTTTCAA AGGGCAATCA GTTAACGAAT TAGCAGCAGG TGCTGAGGGC
ACAGTTATTT TAGATGAGAG TCCATTTTAT GCCGAAGCGG GTGGTCAAGC TGGTGATACA
GGTACGTTAG TCACTGACGC GGGTGGTTTC AGCGTAAAAG ATACGGTTAA GTTAGGGAAA
GCAATCGCCC ATAAAGGCGC TGCCCTTAGC AAGCTAAGCG TGGGAGATAG CGTATTAGCA
AAGGTTAATG GTGTTCGTCG CCATGCAATT AAGCTAAACC ACAGCGCGAC GCATTTAATG
CACGCAGCAC TGAAATCGAT TCTTGGTGAG CATGTAAACC AAAAAGGTTC GTTAGTACAA
GCGGATCGCT TGCGCTTTGA TTTCTCGCAT TTTGAAGCGA TGAGTAAAGA GCAAGTGCTG
GCTGTGGAAA CCATGGTGAA TGAGCAGATA CTCGCTAATC ATCCTTTGCA AACTCAACTA
ATGGGCTTAG AGCAAGCAAA AGAAGCTGGT GCGATGGCCT TGTTCGGTGA GAAATACGAT
GATGATGTGC GCGTGGTGTC CATGGGGAGT TTCTCGATGG AACTGTGCGG CGGTACGCAC
GTTGAACGCA CTGGTGATAT TGGATTATTC AAAATCATCT CAGAAAGCGG TATCGCGTCA
GGCGTGCGAC GAATAGAAGC GGTAACAGGT TTGACTGCAC TCCAACATGT ACAGCAACAG
ACATTCGAAC TAAGTTCTAT TAGCGCAGTC TTAAAAACGG ATGTTAATTC TGCGGGTGAG
CGCGTTGTTC AACTTATCGA GCAGACTAAA ACGCTCGAAA AAGAAGTCGC TAAACTTAAG
CAGGAAATAG CTAATAGCGC GGGGAGTGAT CTTTTATCCC AGATAAACGA AATAAATGGG
GTAAAAGTAT TGTCTTATCA TGTACAAGGC ATTGAAAGTG GGGCTTTACG CACCATGATA
GATGATCTAA AGAATCAAAT CGGCAGTGGC GTTATCCTTT TAGGGTTAGC AACTGGCGAT
AAGGTTAGTT TAATTGCTGG CGTTACGAAG GATTTAACCC ACAAGGTGAA AGCCGGCGAG
TTAGTCAATT TTGTGGCTCA GCAAGTAGGT GGAAAAGGTG GCGGACGTCC TGATATGGCG
CAAGCTGGTG GCTCTCAACC TGAGAACTTA GACACTGCGA TTGCCTCTGT TTCAGAGTGG
TTGCAAGAAA GGCTGTAA
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| Protein sequence | MSKSTAQIRQ AFLNFFADKG HQKVSSSSLV PSDDPTLLFT NAGMNQFKDV FLGTEQRKYT
RATSSQRCVR AGGKHNDLEN VGYTARHHTF FEMLGNFSFG DYFKHQAIGY AWSFLTEVLK
LPKDKLLVTV YSEDDEAFDI WHNDIGIPKE KIIRIATSDN FWSMGDTGPC GPCSEIFYDH
GEHIWGGPPG SPEEDGDRFI EIWNLVFMQF NRQANGDMLP LPKPSIDTGM GLERISAIIQ
NVHSNYEIDI FQNLIKATAK IVGVTSLEDK SLRVVADHIR SCSFLISDGV MPSNEGRGYV
LRRIIRRAVR HGNKLGANGV FFYKLVAALA TEMGDAYPEL NEQRAVIEKV LRVEEEQFSR
TLERGMLILN DALNELEGKV VPGDVVFKLY DTYGFPADLT NDVAREKGLS IDEEGFEQAM
AEQRKRAQKA SNFDVDYNEQ LRSDLESIFV GYEHEDNTAT ITELFFKGQS VNELAAGAEG
TVILDESPFY AEAGGQAGDT GTLVTDAGGF SVKDTVKLGK AIAHKGAALS KLSVGDSVLA
KVNGVRRHAI KLNHSATHLM HAALKSILGE HVNQKGSLVQ ADRLRFDFSH FEAMSKEQVL
AVETMVNEQI LANHPLQTQL MGLEQAKEAG AMALFGEKYD DDVRVVSMGS FSMELCGGTH
VERTGDIGLF KIISESGIAS GVRRIEAVTG LTALQHVQQQ TFELSSISAV LKTDVNSAGE
RVVQLIEQTK TLEKEVAKLK QEIANSAGSD LLSQINEING VKVLSYHVQG IESGALRTMI
DDLKNQIGSG VILLGLATGD KVSLIAGVTK DLTHKVKAGE LVNFVAQQVG GKGGGRPDMA
QAGGSQPENL DTAIASVSEW LQERL
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