| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3006 |
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| Symbol | |
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| ID | 4174776 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 3633057 |
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| End bp | 3634691 |
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| Gene Length | 1635 bp |
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| Protein Length | 544 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638056031 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_662568 |
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| Protein GI | 109899313 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTATG CTTGGCTGCC CTCTTCCACC GTTATGTTTG TCAGCATGTT CGTGACAATA
TCATTGACGT TAATTGGCTG TAGTCCTGAG TCCAGCGAAT ACCAGCACCC CAATGGCATC
ATCTATTGTT CAGAAGGTAA CCCGGTCAGC TTTAACCCTC AACTTGACAC GTCGGGCACT
ACGGTTGACG TATCGTCTCA TCAAATTTAT GACCGTCTGC TTGATTTCGA CTTGGTCACT
GGGGAAATCA TTTCTGGCCT TGCCAGCAGC TGGATGACCA GCGTTGATGG CTTGACCTAT
ACCTTCCAAC TGCGAAAAGA TATTGCTTTT CACAGTACCG GTTATTTCAC CCCAACTCGT
TCATTTGATG CTGATGATGT GGTATTTAGT TTTAATCGCT GGCGCGACAA GAACCACCCT
TACCATGATG TATCAGGCGG GCGTTATCCG TATATCAATA GCGTTGGCTT GGGCGATCTT
ATCAGCGATA TTAAACGCAT AAACAGATAC CGAGTCGAAA TCACACTGGT GCGCCCTGAA
AGCTCTTTTT TAGCCAATTT AGCCACCGAT TTCTCAATTA TATTATCCGC TGAATATGCT
GAAAAACTTG CAGCTGCAGG CACACCAGAT CTGATAGATA CACATCCTGT AGGCACAGGA
CCATTTAAAT TTAATAGCTT TAGACAAGAC AGGTACGTAC GTTTTGATGC TCATCCTAAA
TATTGGCGCG AGCGCAGCAC AACGCAACAA CTCATTTTCG ACATTACTCC TTCAAGTTCA
TTACGCTTGG CGAAGCTCAT GACTGGCGAA TGCGACTCTA TGGCGTTCCC AACACACAGC
CAGCTGGATA TCATCCGTAA GCGAAAGGAA TTAACACTCG ATGAAAAACC AGGGTTAAAT
GTAGGTTTTT GGGCATTTAA CACCACAAGG CCACCGTTTG ATAAACCAGA GGTACGCCGT
GCACTGGCCA TGGCGATTGA TAAGAACGCG CTTATGGAAG CGATTTATTT TGGTAGTGCG
ATCCCTGCAA CATCCATCAT TCCTCCTTCT TCATGGGCCT TTCAACCGGA TACCAGATCA
TCCACTTTTA ATCCTTTAGC TGCAGCTAAA TTATTACGTG AAAATGGTGT TGAGGAAGGC
TTTAGTATGA CTATTTGGGC AATGCCCGTT GAGCGTGCTT ATAATCCTAA CGCCATGAAA
ATGGCCGAAT TAATGCAGCG CTACCTGCGA AATGTTGGTA TTGATGCAAA TATTGTCAGC
TACGAATGGT CAACTTTCCG AGCGAGGTTA AATCAAGGTT TGCATGATTC CGTGTTAATT
GGCTGGTCTG CTGATAACGG CGATCCCGAT AATTTTTTCA GGCCGCTACT CACATGCTCA
GCTATAGACT CAGGTACAAA CCGCGCTCGT TGGTGCTCCA AGGAATACGA CAAACTAATT
GACCAGGCGC TCAATTACAC CGCACAGGAA GACAGAGCAT ACTTTTATAG CAAAGCAATT
GAACTGATTA ATGAGCAAAT GCCACTCATG CCTATTGCCC ACGCATTTCG CTATCAAGCG
TACCGGGACA ATGTAACTGG CATTGAAATA AACCCGTATG GCGGCATTCA GTTTAGAAAC
GTGAGTAAGC AATAA
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| Protein sequence | MNYAWLPSST VMFVSMFVTI SLTLIGCSPE SSEYQHPNGI IYCSEGNPVS FNPQLDTSGT
TVDVSSHQIY DRLLDFDLVT GEIISGLASS WMTSVDGLTY TFQLRKDIAF HSTGYFTPTR
SFDADDVVFS FNRWRDKNHP YHDVSGGRYP YINSVGLGDL ISDIKRINRY RVEITLVRPE
SSFLANLATD FSIILSAEYA EKLAAAGTPD LIDTHPVGTG PFKFNSFRQD RYVRFDAHPK
YWRERSTTQQ LIFDITPSSS LRLAKLMTGE CDSMAFPTHS QLDIIRKRKE LTLDEKPGLN
VGFWAFNTTR PPFDKPEVRR ALAMAIDKNA LMEAIYFGSA IPATSIIPPS SWAFQPDTRS
STFNPLAAAK LLRENGVEEG FSMTIWAMPV ERAYNPNAMK MAELMQRYLR NVGIDANIVS
YEWSTFRARL NQGLHDSVLI GWSADNGDPD NFFRPLLTCS AIDSGTNRAR WCSKEYDKLI
DQALNYTAQE DRAYFYSKAI ELINEQMPLM PIAHAFRYQA YRDNVTGIEI NPYGGIQFRN
VSKQ
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