| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3000 |
|---|
| Symbol | |
|---|
| ID | 4174770 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 3627662 |
|---|
| End bp | 3628738 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638056025 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_662562 |
|---|
| Protein GI | 109899307 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3768] Predicted membrane protein |
|---|
| TIGRFAM ID | [TIGR01620] conserved hypothetical protein, TIGR01620 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.974261 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACGC TTGACAACAA TATTGACAAA CCAGAGGTTG AAGGTAAGGA AGGCCCTGAG
AATATCAAGT CCAAGGTACT TTTACCCTCC CAATCTGAAG AGGTTCCACT CGAACCTATT
CGACGCGCCG CGACTATCGA TCCTGCTGCA AATTGGCAGG CTTTGGCTCA AGATGAGTAT
GAATTTGACA CTACGCATGA TAATGATGTT GATGAAAACA CGCCTAAACG TAAACGATGG
TTGGTAACGT TTTTCACTAT GCTGAGCGTG GTTGTACTGC TTGCAAGCTT TGTAGAGATA
GGCCTTTTTA TACGCGATAT GTATCTAAGC GAAGATTGGC TTAGTGGCAT CTGGTTGGCC
ATTGGTGTGT CCATATTAGC GTTAGTATTT GCTGCTTTGT ACAGTGAGTG GCGTGGCTTA
AAGCGCCTTA AAAGACAAAG CGCTTCCCGC CAAATCTCTT TGGAGCTTTA CGCGACACCC
GCAATAGGGC TGGCTAAACA ACATTGTTTA GACATTGCTA ACACGCTGCC AGCAGGCTAC
GAAAACGAGG TAGCGTTGTG GCAAAAGAGC ATTGATGAGC ACCATACCGA CACTGAAGTA
TTGAGCTTGT TTGAACAACA AGTCATCACC AAGGTGGATC AAGCTGCACT GGCTAAGGTG
ATGCGTAACG CAGGCGCATC AAGCGTGATG ATTGCAGTGA GTCCGTTTGC GCTGGTGGAT
ATGGCAATTG TGCTGTGGCG GAATATTCGC ATGATGCAAC AGGTGAGTGA AGTGTACGGT
GTACACTTAG GGTATTGGGG ACGCATCGCT TTGATTCGGC AAGTGTTTAA AAATATGCTT
TACGCAGGTG CTGCTGAAAT CATCTCTGAC GCAGGCAATT ACGCCCTTGG GGCAAGTATT
ACTGGCAAGC TGTCCACTCG TATCGCCCAA GGAATGGGGG CGGGGGTACT AACCGCCAGA
ATTGGTTTAA ATGCAATCCA TAGTTGTAGG CCTTTACCTT GGCTGTCAGT GAAGCGACCA
GGTTTGAATC AGTTAAGTAA GAAAATATTG ACAGATTTGC ATAAGCAGCT GAAATAA
|
|---|
| Protein sequence | MSTLDNNIDK PEVEGKEGPE NIKSKVLLPS QSEEVPLEPI RRAATIDPAA NWQALAQDEY
EFDTTHDNDV DENTPKRKRW LVTFFTMLSV VVLLASFVEI GLFIRDMYLS EDWLSGIWLA
IGVSILALVF AALYSEWRGL KRLKRQSASR QISLELYATP AIGLAKQHCL DIANTLPAGY
ENEVALWQKS IDEHHTDTEV LSLFEQQVIT KVDQAALAKV MRNAGASSVM IAVSPFALVD
MAIVLWRNIR MMQQVSEVYG VHLGYWGRIA LIRQVFKNML YAGAAEIISD AGNYALGASI
TGKLSTRIAQ GMGAGVLTAR IGLNAIHSCR PLPWLSVKRP GLNQLSKKIL TDLHKQLK
|
|---|
| |