| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2998 |
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| Symbol | |
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| ID | 4174768 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3624746 |
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| End bp | 3626302 |
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| Gene Length | 1557 bp |
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| Protein Length | 518 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638056023 |
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| Product | transcriptional regulator, TyrR |
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| Protein accession | YP_662560 |
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| Protein GI | 109899305 |
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| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
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| COG ID | [COG3283] Transcriptional regulator of aromatic amino acids metabolism |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.014514 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTCTGG AAATAAGCTG TCAGGACCGT CTGGGGATCA CGCAAGATGT CCTCGATATT
TTGGTCAGTC ATGAGGTCGA CTTACGCGGT ATTGAAATCA ATGAAATGGG TAAAATTTAC
CTAAGTTTCC CAAATATGGA TTTCGAGCAC TTCCAACATC TGATGCCAAA AATTAGAAAG
ATAGCAGGTA TCGATGATGT GAAAACTATT CCTTTTATGC CCCTCGAACG GGAGCAAAAT
CAGTTACGCG CACTTCTACA AACCTTACCA GACCCTGTAT TTTCCGTTGA TACCAAAGGG
CGGATTTTGC TTATTAATGA TGCGGTTACA GCGAGTTTAG AAACCGAGCG TGAAGCACTG
ATCGGTGTTG ATATCGATGA GTTAGTGAAA GGGTTCAATA CACTGCGCTG GTTAGAAAGT
AAGAAGATTG CCAGCCTTAC GCAGAAGGTA CGCTTCATTG AGCAAAATTA CTTAGCCGAT
ATCTTACCCG TTATGGTGCC TGATTCTGGA GGCGACCCTA TTTTAGCTGG AGCAGTATTT
ATGCTTAAGT CAGAACAGCG CCTAGGACAG CAATTAACCG TATTTCACGA GGCGTCACTT
GACAGTTTTA TGTCGATTCA AGCCTCGAGC AAGGTGATGA AAAAAGTGGT TCGTGAGGCT
AAGCGGATGG CTGAGCTTGA TGGCCCAATT ATATTGTACG GCGAAACAGG CACAGGCAAA
GAGTTAATCG CCCATGCCTG TCACGAAGCA AGTCGAAGAA AAGACGCCAG TTTTTTAGTG
TTAAATTGTG CTTCGCTGCC TGACAACGTA GCTGAAACTG AGCTATTTGG ATATGCCGCC
GGCGCCTTTG GGCAAAGTAC AGGGAAAGAA GGGTTACTTG AACTTGCACA GGGTGGAAGT
TTATTCCTTG ATGAAGTCGG GGATATGTCG CCTCAACTAC AAGCGAAGTT ACTACGCGTG
CTTCAAGATG GAAAGTTTAG GCGCGTTGGA GATACTAAAG AAGTAAAAGT AGATGTCAGG
TTTATTTGCA CAACGCAAAA AGACCTCGCT CAGTTAGTCC AAGAGGGACG TTTTCGAGAG
GACTTATATT ACCGTTTAAA TGTGCTCAGT TTGGGAATTC CGCCATTGCG TGAACGTAAA
ATGGACATCA TTCCTTTAGC GGAAACCTTT TTGAAGCAGC ACAGCCTGAC GCTGGGTCGT
AAAGTCCCTA AATTAACCAA ATCCTGTGTC GATTATATTC AAGCCTATCC TTGGTTTGGC
AATGTGCGTC AATTAGAGAA TGTGCTCTAT CGGGCGGTCT CTTTGCTGGA AGGCAATGAG
CTTGGAAAGG AGCATATTCA AATCCCTTCG AGTGCCAATG CCATGAGTTT TGTGACCGAA
GACTTCGATG GTAGTTTAGA CGAAGAAGTA AAACGCTTTG AAAAAAGTAT TTTACAGCGG
CTTTACCCGA GTTACCCCAG CTCAAGGCTT TTAGCAAAAA AACTGGGTCT TAGTCATACC
GCTATTGCGA ATAAGCTTCG TGATTATGGA ATAAATAAAA AGTCCGTAAA GATATAA
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| Protein sequence | MRLEISCQDR LGITQDVLDI LVSHEVDLRG IEINEMGKIY LSFPNMDFEH FQHLMPKIRK
IAGIDDVKTI PFMPLEREQN QLRALLQTLP DPVFSVDTKG RILLINDAVT ASLETEREAL
IGVDIDELVK GFNTLRWLES KKIASLTQKV RFIEQNYLAD ILPVMVPDSG GDPILAGAVF
MLKSEQRLGQ QLTVFHEASL DSFMSIQASS KVMKKVVREA KRMAELDGPI ILYGETGTGK
ELIAHACHEA SRRKDASFLV LNCASLPDNV AETELFGYAA GAFGQSTGKE GLLELAQGGS
LFLDEVGDMS PQLQAKLLRV LQDGKFRRVG DTKEVKVDVR FICTTQKDLA QLVQEGRFRE
DLYYRLNVLS LGIPPLRERK MDIIPLAETF LKQHSLTLGR KVPKLTKSCV DYIQAYPWFG
NVRQLENVLY RAVSLLEGNE LGKEHIQIPS SANAMSFVTE DFDGSLDEEV KRFEKSILQR
LYPSYPSSRL LAKKLGLSHT AIANKLRDYG INKKSVKI
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