| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2986 |
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| Symbol | |
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| ID | 4174756 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3610168 |
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| End bp | 3610782 |
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| Gene Length | 615 bp |
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| Protein Length | 204 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638056011 |
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| Product | TonB family protein |
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| Protein accession | YP_662548 |
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| Protein GI | 109899293 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
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| TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.328592 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGGACGTT TAATTGTTTC TGTACTCCTT GGTGGGGTAA TCGCGTTTGT ATTATTTGTT
GTCATGGCCA AGTTAATTGC TAACTCGTCA CGTCCAGCAG ATAAGGTACC ACCTGCGCCT
GTAATTGATA TTGTTATGTC TACACCGGAT GATTCTACTC AAACTAGAAC TCGTGTACCG
CCTCCGCCTC CGCCTCCGCC CCAGCAGCCT CCTAAATTGG AGCCAGTTGA GCCGGATACA
GCAGATGCTA ATACTGATGG CTTGAGTTTC AATATGCCAG CTGTCGATAT TGGCGGAGCT
TCAGTTGACA TCGGTGGTGT TGGTGCAATG CAACGAGATG GCGATGCAAC ACCTATCGTT
CGAATTGAAC CTAAGTATCC TGCACAGGCT GCTCGTGATG GCAAAGAAGG GTGGGTTAAA
CTGTCTTTCA CCATTAATGA AGTTGGTGGT GTTGAAGATG TCGACGTTAT CGAAGCTGAT
CCTAAGCGTG TATTTGACCG TGAAGCTAAA CGTGCACTGA GAAAGTGGAA GTATAAGCCT
AAGGTTGAAG ACGGTAAGCC TATGAAGCAG TTCGGTATGA AAGTTCAGTT AGACTTTAAG
TTGGATCAAT CATAA
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| Protein sequence | MGRLIVSVLL GGVIAFVLFV VMAKLIANSS RPADKVPPAP VIDIVMSTPD DSTQTRTRVP
PPPPPPPQQP PKLEPVEPDT ADANTDGLSF NMPAVDIGGA SVDIGGVGAM QRDGDATPIV
RIEPKYPAQA ARDGKEGWVK LSFTINEVGG VEDVDVIEAD PKRVFDREAK RALRKWKYKP
KVEDGKPMKQ FGMKVQLDFK LDQS
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