Gene Patl_2977 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2977 
Symbol 
ID4174747 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp3602009 
End bp3602959 
Gene Length951 bp 
Protein Length316 aa 
Translation table11 
GC content43% 
IMG OID638056002 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_662539 
Protein GI109899284 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTACTA CAAATCGATT TGGTCCGAAT GGTTGGACCC CAGAGCGTAT CGGCTCACTT 
GCGGGCAAAA CCTTTGTTAT TACTGGAGCC AATACTGGAG CAGGTTTTCA AGCTACACGT
ATCTTGTTGT CTAAGGGCGC TAACGTGGTA ATGTTGAACC GCAACCCAAG TAAATCAGAA
GCTGCAATCG CAGAGCTTAA AAATGAATTT GGTGATGCTA CCGCTGTAAG CTATATACGG
ATGGATTTAG CAGAGCTAGC CTCAATTAGA CAAGCATCGA AACAAGTATT AGCGGAAGTC
CCTAAAATTG ATGCACTTAT GTGTAACGGC GCTATTGCAC AGATCTCTAC CCAGCAATTA
ACGGTAGATG GATTTGAAAG CCAACTAGGG GTAAATCATT ACGGCCATTT CTTATTGTGC
GGTTTACTTT TTGGTCGCAT CGAAGCATCA CAGGGCAGAA TTGTGGTGGT GTCGAGTGAA
GGCCATAAAA TGGGGATAAG AAGCATTCAG TTTGACGATA TGAATTGGGA TAAAAATTAT
CATCCAAATA AAGTGTATAG CCAAAGTAAA CTTGCCCAAA TGATGTTTGC ATACGAATTA
CAAGACAAGG TCAAAGCAGC AGGTAAAAAT GTCAAAGTTT ACGTTTGCCA CCCTGGCGCA
TCTAACACCT CCCTTATCAG AGAAAGCGCC AGCTTTATGA CCAGAATATC TTGGGCATTC
ATGGTAAAGA TAGGCATTGC GCAAACCGCA GAAAAAGGCG CTTACCCAGA AGTGATGTGT
GCGACCGAAG ATAGCTTAAA GGAGCGTGCG TATTACGGCC CAACTGGGTT TATGAATTTC
GGAGGCCCAG TAGGAGAAGG CAAACTTGAG TCATTTGCAT TAAACAAAGA GGTATTAACA
AAGTTATGGA CGCTATCTGA AAGAGAAACA TCTATTTATT GGCCCTTTTA A
 
Protein sequence
MTTTNRFGPN GWTPERIGSL AGKTFVITGA NTGAGFQATR ILLSKGANVV MLNRNPSKSE 
AAIAELKNEF GDATAVSYIR MDLAELASIR QASKQVLAEV PKIDALMCNG AIAQISTQQL
TVDGFESQLG VNHYGHFLLC GLLFGRIEAS QGRIVVVSSE GHKMGIRSIQ FDDMNWDKNY
HPNKVYSQSK LAQMMFAYEL QDKVKAAGKN VKVYVCHPGA SNTSLIRESA SFMTRISWAF
MVKIGIAQTA EKGAYPEVMC ATEDSLKERA YYGPTGFMNF GGPVGEGKLE SFALNKEVLT
KLWTLSERET SIYWPF