Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_2977 |
Symbol | |
ID | 4174747 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 3602009 |
End bp | 3602959 |
Gene Length | 951 bp |
Protein Length | 316 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638056002 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_662539 |
Protein GI | 109899284 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTACTA CAAATCGATT TGGTCCGAAT GGTTGGACCC CAGAGCGTAT CGGCTCACTT GCGGGCAAAA CCTTTGTTAT TACTGGAGCC AATACTGGAG CAGGTTTTCA AGCTACACGT ATCTTGTTGT CTAAGGGCGC TAACGTGGTA ATGTTGAACC GCAACCCAAG TAAATCAGAA GCTGCAATCG CAGAGCTTAA AAATGAATTT GGTGATGCTA CCGCTGTAAG CTATATACGG ATGGATTTAG CAGAGCTAGC CTCAATTAGA CAAGCATCGA AACAAGTATT AGCGGAAGTC CCTAAAATTG ATGCACTTAT GTGTAACGGC GCTATTGCAC AGATCTCTAC CCAGCAATTA ACGGTAGATG GATTTGAAAG CCAACTAGGG GTAAATCATT ACGGCCATTT CTTATTGTGC GGTTTACTTT TTGGTCGCAT CGAAGCATCA CAGGGCAGAA TTGTGGTGGT GTCGAGTGAA GGCCATAAAA TGGGGATAAG AAGCATTCAG TTTGACGATA TGAATTGGGA TAAAAATTAT CATCCAAATA AAGTGTATAG CCAAAGTAAA CTTGCCCAAA TGATGTTTGC ATACGAATTA CAAGACAAGG TCAAAGCAGC AGGTAAAAAT GTCAAAGTTT ACGTTTGCCA CCCTGGCGCA TCTAACACCT CCCTTATCAG AGAAAGCGCC AGCTTTATGA CCAGAATATC TTGGGCATTC ATGGTAAAGA TAGGCATTGC GCAAACCGCA GAAAAAGGCG CTTACCCAGA AGTGATGTGT GCGACCGAAG ATAGCTTAAA GGAGCGTGCG TATTACGGCC CAACTGGGTT TATGAATTTC GGAGGCCCAG TAGGAGAAGG CAAACTTGAG TCATTTGCAT TAAACAAAGA GGTATTAACA AAGTTATGGA CGCTATCTGA AAGAGAAACA TCTATTTATT GGCCCTTTTA A
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Protein sequence | MTTTNRFGPN GWTPERIGSL AGKTFVITGA NTGAGFQATR ILLSKGANVV MLNRNPSKSE AAIAELKNEF GDATAVSYIR MDLAELASIR QASKQVLAEV PKIDALMCNG AIAQISTQQL TVDGFESQLG VNHYGHFLLC GLLFGRIEAS QGRIVVVSSE GHKMGIRSIQ FDDMNWDKNY HPNKVYSQSK LAQMMFAYEL QDKVKAAGKN VKVYVCHPGA SNTSLIRESA SFMTRISWAF MVKIGIAQTA EKGAYPEVMC ATEDSLKERA YYGPTGFMNF GGPVGEGKLE SFALNKEVLT KLWTLSERET SIYWPF
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