Gene Patl_2946 details

Gene Information

• Locus tag: Patl_2946
• Symbol: ruvC
• ID: 4174714
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: -
• Start bp: 3568115
• End bp: 3568636
• Gene Length: 522 bp
• Protein Length: 173 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 638055969
• Product: Holliday junction resolvase
• Protein accession: YP_662508
• Protein GI: 109899253
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0817] Holliday junction resolvasome, endonuclease subunit
• TIGRFAM ID: [TIGR00228] crossover junction endodeoxyribonuclease RuvC

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.185202
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGCAATTA TTCTCGGCAT AGATCCTGGC TCACGCATTA CTGGCTACGG CGTAATACAA 
AGGGCAGGGC GACAACAACA ATATTTAGGC AGTGGTTGTA TTCGAATGCA GGGGGACGCA 
CTGGCGCCGC GATTACAGCA AATATTTGAC GGTGTCAGCC AGTTAATACT GCAATATAAA 
CCCGATATGT TCGCTATTGA GCAAGTCTTT ATGGCTAAAA ACCCTGATTC AGCGTTAAAA 
CTGGGTCAAG CCCGAGGCGC GGCTATTGTT GCAGCGTCCA ACCAAGGACT TGATGTAGCG 
GAGTATTCCG CTCGGCAAAT TAAACAATCT GTGGTGGGCA ACGGGAACGC ACAAAAAAGC 
CAAGTACAAC ATATGGTCAC GTTTATTTTG AAGCTACCGG GCACGCCTCA AGCTGATGCT 
GCAGATGCAT TAGCGGTTGC GCTTTGCCAT AGCCACACCA ACGAAAACCT CATCAAGATG 
TCAGGTCAGG TGAAAAAGAC CGTACGCGGC AGATTACGAT AA 

 

Protein sequence

MAIILGIDPG SRITGYGVIQ RAGRQQQYLG SGCIRMQGDA LAPRLQQIFD GVSQLILQYK 
PDMFAIEQVF MAKNPDSALK LGQARGAAIV AASNQGLDVA EYSARQIKQS VVGNGNAQKS 
QVQHMVTFIL KLPGTPQADA ADALAVALCH SHTNENLIKM SGQVKKTVRG RLR