Gene Patl_2939 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2939 
SymboltolB 
ID4174707 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp3561905 
End bp3563260 
Gene Length1356 bp 
Protein Length451 aa 
Translation table11 
GC content47% 
IMG OID638055962 
Producttranslocation protein TolB 
Protein accessionYP_662501 
Protein GI109899246 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0823] Periplasmic component of the Tol biopolymer transport system 
TIGRFAM ID[TIGR02800] tol-pal system beta propeller repeat protein TolB 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00432408 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAAGAT TGACCCGTGT TTTAACATTT TTAAGTGTAG TGCTCACTGC ATCTAGCCAG 
GCGAGTTTGG AAATTGTGAT CACCGAAGGA ATCGATTCTG CGCGACCAAT TGCCATTGTG
CCATTCAAAT GGAATGGCCC AGGCCAAATG CCAGAAAGCT TATCCGAAGT GGTTAGCGGC
GACCTATTAC GAAGCGGTAA GTTTAGCCCT ATCGATAGCA CTGACATGCC AGGGCAACCT
CATAACGACA ATGAATTGGA TTATAGTGCT TGGGCAGCAA CCGGCGTCGA AGCTATTTTG
GTGGGTTCGG TCACCCCTGA AGGCCCTGAT CGTTATCGTG TTAACTTCAC ATTAGTCGAC
GCTATTAGAG GTCAAATCAC CGGTGGCAAT GCGCGGGCAT TAAGCGGTGG TAAATTAACC
AACAGTAACG ACCATATTTT AGATAGCCGC CAGACTGTTA TTACAGGCCA AGGATTTAGA
CAATACGCTC ATCGCATCAG TGATGTGGTG TACGAAAAAT TAACGGGTGA GAAGGGCGCC
TTTATGACGC GTATTGCTTA CGTTGTTGTG CGGGACCGTA AAACCAATGA GTTTCCTTAT
CAGCTCGTTG TTGCAGACTA TGACGGTGTT AACGAGACGA TGTTACTGCG CTCTAAAGAG
CCTTTGATGT CACCTTCTTG GTCGCCTGAC GGGACCAAGC TGGCTTATGT CACATTTGAA
AATAAGCGCT CACAGATATA CATTCAAGAC TTATACACCA TGAGCCGAAC GCAAATGACC
GATTTTCCTG GCATAAACAG TGCGCCGGTT TTCTCACCCA ACGGTAGGCA ATTAGCCATG
GTGTTATCGA AAGACGGTAA CCCAGAGATT TACGTGATGG ACGTGGCTTC TAAACGCCTA
GAGCGGATAA CTCGCAACCG AGCGATAGAC ACGGAACCGA GCTGGACACC CGATGGTAAG
AGCTTGATAT TTAGTTCCGA ACGGGGTGGT AAACCGCAAA TATATCGCGT AGATTTAGCC
AGTAACAACG TCAGAAGGGT AACGTTTGAT GGCGAAATGA ACCTTGGGGG AACCATCACC
CCAGACGGCG GTCGCATGGT TATGGTCAAC CGTACCAGAG GGAACTACCA TATTGCCGCT
CAGGATTTAG AAAACGGAAA TATTCAGGTA TTAACCAAAA CCTATTTGGA TGAATCCCCG
AGTATTGCAC CAAATGGAAG TATGATTATT TACAGTACGT TACACCAAGG CAAGCAAGTT
TTATCCTTGG TTTCCTTGGA TGGTCGCTTT AAGGCGCGTT TACCCGCTTC TGATGGGCAG
GTTAAGTCGC CAAGTTGGTC TCCATTTTTG TTGTAA
 
Protein sequence
MTRLTRVLTF LSVVLTASSQ ASLEIVITEG IDSARPIAIV PFKWNGPGQM PESLSEVVSG 
DLLRSGKFSP IDSTDMPGQP HNDNELDYSA WAATGVEAIL VGSVTPEGPD RYRVNFTLVD
AIRGQITGGN ARALSGGKLT NSNDHILDSR QTVITGQGFR QYAHRISDVV YEKLTGEKGA
FMTRIAYVVV RDRKTNEFPY QLVVADYDGV NETMLLRSKE PLMSPSWSPD GTKLAYVTFE
NKRSQIYIQD LYTMSRTQMT DFPGINSAPV FSPNGRQLAM VLSKDGNPEI YVMDVASKRL
ERITRNRAID TEPSWTPDGK SLIFSSERGG KPQIYRVDLA SNNVRRVTFD GEMNLGGTIT
PDGGRMVMVN RTRGNYHIAA QDLENGNIQV LTKTYLDESP SIAPNGSMII YSTLHQGKQV
LSLVSLDGRF KARLPASDGQ VKSPSWSPFL L