| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2939 |
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| Symbol | tolB |
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| ID | 4174707 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3561905 |
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| End bp | 3563260 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638055962 |
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| Product | translocation protein TolB |
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| Protein accession | YP_662501 |
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| Protein GI | 109899246 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00432408 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAGAT TGACCCGTGT TTTAACATTT TTAAGTGTAG TGCTCACTGC ATCTAGCCAG
GCGAGTTTGG AAATTGTGAT CACCGAAGGA ATCGATTCTG CGCGACCAAT TGCCATTGTG
CCATTCAAAT GGAATGGCCC AGGCCAAATG CCAGAAAGCT TATCCGAAGT GGTTAGCGGC
GACCTATTAC GAAGCGGTAA GTTTAGCCCT ATCGATAGCA CTGACATGCC AGGGCAACCT
CATAACGACA ATGAATTGGA TTATAGTGCT TGGGCAGCAA CCGGCGTCGA AGCTATTTTG
GTGGGTTCGG TCACCCCTGA AGGCCCTGAT CGTTATCGTG TTAACTTCAC ATTAGTCGAC
GCTATTAGAG GTCAAATCAC CGGTGGCAAT GCGCGGGCAT TAAGCGGTGG TAAATTAACC
AACAGTAACG ACCATATTTT AGATAGCCGC CAGACTGTTA TTACAGGCCA AGGATTTAGA
CAATACGCTC ATCGCATCAG TGATGTGGTG TACGAAAAAT TAACGGGTGA GAAGGGCGCC
TTTATGACGC GTATTGCTTA CGTTGTTGTG CGGGACCGTA AAACCAATGA GTTTCCTTAT
CAGCTCGTTG TTGCAGACTA TGACGGTGTT AACGAGACGA TGTTACTGCG CTCTAAAGAG
CCTTTGATGT CACCTTCTTG GTCGCCTGAC GGGACCAAGC TGGCTTATGT CACATTTGAA
AATAAGCGCT CACAGATATA CATTCAAGAC TTATACACCA TGAGCCGAAC GCAAATGACC
GATTTTCCTG GCATAAACAG TGCGCCGGTT TTCTCACCCA ACGGTAGGCA ATTAGCCATG
GTGTTATCGA AAGACGGTAA CCCAGAGATT TACGTGATGG ACGTGGCTTC TAAACGCCTA
GAGCGGATAA CTCGCAACCG AGCGATAGAC ACGGAACCGA GCTGGACACC CGATGGTAAG
AGCTTGATAT TTAGTTCCGA ACGGGGTGGT AAACCGCAAA TATATCGCGT AGATTTAGCC
AGTAACAACG TCAGAAGGGT AACGTTTGAT GGCGAAATGA ACCTTGGGGG AACCATCACC
CCAGACGGCG GTCGCATGGT TATGGTCAAC CGTACCAGAG GGAACTACCA TATTGCCGCT
CAGGATTTAG AAAACGGAAA TATTCAGGTA TTAACCAAAA CCTATTTGGA TGAATCCCCG
AGTATTGCAC CAAATGGAAG TATGATTATT TACAGTACGT TACACCAAGG CAAGCAAGTT
TTATCCTTGG TTTCCTTGGA TGGTCGCTTT AAGGCGCGTT TACCCGCTTC TGATGGGCAG
GTTAAGTCGC CAAGTTGGTC TCCATTTTTG TTGTAA
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| Protein sequence | MTRLTRVLTF LSVVLTASSQ ASLEIVITEG IDSARPIAIV PFKWNGPGQM PESLSEVVSG
DLLRSGKFSP IDSTDMPGQP HNDNELDYSA WAATGVEAIL VGSVTPEGPD RYRVNFTLVD
AIRGQITGGN ARALSGGKLT NSNDHILDSR QTVITGQGFR QYAHRISDVV YEKLTGEKGA
FMTRIAYVVV RDRKTNEFPY QLVVADYDGV NETMLLRSKE PLMSPSWSPD GTKLAYVTFE
NKRSQIYIQD LYTMSRTQMT DFPGINSAPV FSPNGRQLAM VLSKDGNPEI YVMDVASKRL
ERITRNRAID TEPSWTPDGK SLIFSSERGG KPQIYRVDLA SNNVRRVTFD GEMNLGGTIT
PDGGRMVMVN RTRGNYHIAA QDLENGNIQV LTKTYLDESP SIAPNGSMII YSTLHQGKQV
LSLVSLDGRF KARLPASDGQ VKSPSWSPFL L
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