Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_2939 |
Symbol | tolB |
ID | 4174707 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 3561905 |
End bp | 3563260 |
Gene Length | 1356 bp |
Protein Length | 451 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638055962 |
Product | translocation protein TolB |
Protein accession | YP_662501 |
Protein GI | 109899246 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00432408 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAAGAT TGACCCGTGT TTTAACATTT TTAAGTGTAG TGCTCACTGC ATCTAGCCAG GCGAGTTTGG AAATTGTGAT CACCGAAGGA ATCGATTCTG CGCGACCAAT TGCCATTGTG CCATTCAAAT GGAATGGCCC AGGCCAAATG CCAGAAAGCT TATCCGAAGT GGTTAGCGGC GACCTATTAC GAAGCGGTAA GTTTAGCCCT ATCGATAGCA CTGACATGCC AGGGCAACCT CATAACGACA ATGAATTGGA TTATAGTGCT TGGGCAGCAA CCGGCGTCGA AGCTATTTTG GTGGGTTCGG TCACCCCTGA AGGCCCTGAT CGTTATCGTG TTAACTTCAC ATTAGTCGAC GCTATTAGAG GTCAAATCAC CGGTGGCAAT GCGCGGGCAT TAAGCGGTGG TAAATTAACC AACAGTAACG ACCATATTTT AGATAGCCGC CAGACTGTTA TTACAGGCCA AGGATTTAGA CAATACGCTC ATCGCATCAG TGATGTGGTG TACGAAAAAT TAACGGGTGA GAAGGGCGCC TTTATGACGC GTATTGCTTA CGTTGTTGTG CGGGACCGTA AAACCAATGA GTTTCCTTAT CAGCTCGTTG TTGCAGACTA TGACGGTGTT AACGAGACGA TGTTACTGCG CTCTAAAGAG CCTTTGATGT CACCTTCTTG GTCGCCTGAC GGGACCAAGC TGGCTTATGT CACATTTGAA AATAAGCGCT CACAGATATA CATTCAAGAC TTATACACCA TGAGCCGAAC GCAAATGACC GATTTTCCTG GCATAAACAG TGCGCCGGTT TTCTCACCCA ACGGTAGGCA ATTAGCCATG GTGTTATCGA AAGACGGTAA CCCAGAGATT TACGTGATGG ACGTGGCTTC TAAACGCCTA GAGCGGATAA CTCGCAACCG AGCGATAGAC ACGGAACCGA GCTGGACACC CGATGGTAAG AGCTTGATAT TTAGTTCCGA ACGGGGTGGT AAACCGCAAA TATATCGCGT AGATTTAGCC AGTAACAACG TCAGAAGGGT AACGTTTGAT GGCGAAATGA ACCTTGGGGG AACCATCACC CCAGACGGCG GTCGCATGGT TATGGTCAAC CGTACCAGAG GGAACTACCA TATTGCCGCT CAGGATTTAG AAAACGGAAA TATTCAGGTA TTAACCAAAA CCTATTTGGA TGAATCCCCG AGTATTGCAC CAAATGGAAG TATGATTATT TACAGTACGT TACACCAAGG CAAGCAAGTT TTATCCTTGG TTTCCTTGGA TGGTCGCTTT AAGGCGCGTT TACCCGCTTC TGATGGGCAG GTTAAGTCGC CAAGTTGGTC TCCATTTTTG TTGTAA
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Protein sequence | MTRLTRVLTF LSVVLTASSQ ASLEIVITEG IDSARPIAIV PFKWNGPGQM PESLSEVVSG DLLRSGKFSP IDSTDMPGQP HNDNELDYSA WAATGVEAIL VGSVTPEGPD RYRVNFTLVD AIRGQITGGN ARALSGGKLT NSNDHILDSR QTVITGQGFR QYAHRISDVV YEKLTGEKGA FMTRIAYVVV RDRKTNEFPY QLVVADYDGV NETMLLRSKE PLMSPSWSPD GTKLAYVTFE NKRSQIYIQD LYTMSRTQMT DFPGINSAPV FSPNGRQLAM VLSKDGNPEI YVMDVASKRL ERITRNRAID TEPSWTPDGK SLIFSSERGG KPQIYRVDLA SNNVRRVTFD GEMNLGGTIT PDGGRMVMVN RTRGNYHIAA QDLENGNIQV LTKTYLDESP SIAPNGSMII YSTLHQGKQV LSLVSLDGRF KARLPASDGQ VKSPSWSPFL L
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