| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2938 |
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| Symbol | |
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| ID | 4174706 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3561298 |
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| End bp | 3561858 |
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| Gene Length | 561 bp |
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| Protein Length | 186 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638055961 |
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| Product | OmpA/MotB |
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| Protein accession | YP_662500 |
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| Protein GI | 109899245 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
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| TIGRFAM ID | [TIGR02802] peptidoglycan-associated lipoprotein |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00109822 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCAACTTA GCAAAATATT CAAAGGCATC ACACTTGCAC TACCTATTGT GACAATGGTT
GCTTGTTCAT CAGGTCCTAG CGAAGAAGAG TTAGCCGCAG AGAGTAACCG TGTTGCTGCT
GCCCAAGCTG AAGCTGATCG CAAGGCGGCA GAAGAAGCAA AAGTGCAAGC AGGCAATATG
AAGCCTATGT TGTCTCCTGA AGAAGTCATG CAGAAAGAAA AAAGTGCATT GATGGAAGAT
CAGGTTGTTT ATTTTGATTT CGACCGTTCA AGCGTCAGTT CTAAGTATTA CTCTTTGCTT
GATCAACACG CTGCATTCTT GGTGAAAAAC CCAGGCCAAG CAGTAGTTAT TGAAGGCCAT
TGTGATAACC GCGGTACGCC TGAATACAAC ATTGCGTTAG GTGAACGCCG TGCTAAATCA
GTTGAGACAT ACTTGATGAA TGCTGGTGTG AGCGCATCTC AAGTTTCTGT TGTTTCATAT
GGCGAAGAAA AGCCAGTTGA TACATCAGGC ACTGCAGCTG CATTTGCTGA AAACCGTCGT
GGTGTTCTTG TATATCAATA A
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| Protein sequence | MQLSKIFKGI TLALPIVTMV ACSSGPSEEE LAAESNRVAA AQAEADRKAA EEAKVQAGNM
KPMLSPEEVM QKEKSALMED QVVYFDFDRS SVSSKYYSLL DQHAAFLVKN PGQAVVIEGH
CDNRGTPEYN IALGERRAKS VETYLMNAGV SASQVSVVSY GEEKPVDTSG TAAAFAENRR
GVLVYQ
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