| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2915 |
|---|
| Symbol | |
|---|
| ID | 4174674 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 3531332 |
|---|
| End bp | 3532264 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638055929 |
|---|
| Product | dihydrouridine synthase, DuS |
|---|
| Protein accession | YP_662477 |
|---|
| Protein GI | 109899222 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCAAGTTA TTTTAGCACC GATGGAAGGG GTGGTTGATC ACCTCATGCG TGACATGTTG
AGTAAAGTGG GTGGCTTTGA CTTGTGCGTA ACTGAGTTCG TAAGGGTGGT GAACTGCTTA
CTACCGAAAA AGGTTTTTTA TCGTATTTGT CCTGAATTAC ATCATGGCGG GTTTACCCCA
AATGGCACGC CCGTGCGGGT GCAATTATTG GGACAAAACC CACAGCCCTT AGCTGAAAAC
GCGGTACGTG CTGTTGAATT AGGCTCTCAT GGTGTCGACT TAAATTTCGG TTGCCCAGCC
AAAACCGTCA ATAAAAGCAA AGGTGGGGCG ATTTTGTTAC GTGAGCCACA AGCCTTATAC
GATATTGTCA GTGCGGTGCG CGAAGCAGTG CCTAAAGAGC ACAAAGTCAC GGCCAAGATG
CGCTTAGGGT TTGAGGATAA AAGCCTCGCG TTTGAGAACG CTGCTGCTAT TGAGGCCGCT
GGGGCTGATT TACTGGTGGT CCATGCCAGA ACCAAAGTAG AAGGATATAA GCCGCCTGCT
TATTGGTCGT GGATCGCGGA CATTAAACAG AAAGTCAATG TTCCCATTAT TGCGAACGGT
GAAATTTGGT CCCAGGAAGA TGCACTCAAT TGCCAAACAC AATCAAATTG CCAAGATATC
ATGTTAGGGC GTGGCATTCT GGCGATGCCT AACTTGGCGC AAGTGGTGCG CGGCGAGCAA
GATGTGATGA GTTGGTCCCA GGTGAATCAA TTGTTGATAG ATTATTCTGG CTATGAGTTG
TTCGGTGATA AAGGCAAGTA CTTTCCTAAT CGTCTTAAAC AGTGGTTGGG ATATTTGTCA
CGGCAATACC CAGAAGCTGA AAATTTGTTT ATGCAAGTAC GTAGGTTGCG TGATTCCAAG
GAGATTGTGC AAGTTTTACG GCAAGACACG TAA
|
|---|
| Protein sequence | MQVILAPMEG VVDHLMRDML SKVGGFDLCV TEFVRVVNCL LPKKVFYRIC PELHHGGFTP
NGTPVRVQLL GQNPQPLAEN AVRAVELGSH GVDLNFGCPA KTVNKSKGGA ILLREPQALY
DIVSAVREAV PKEHKVTAKM RLGFEDKSLA FENAAAIEAA GADLLVVHAR TKVEGYKPPA
YWSWIADIKQ KVNVPIIANG EIWSQEDALN CQTQSNCQDI MLGRGILAMP NLAQVVRGEQ
DVMSWSQVNQ LLIDYSGYEL FGDKGKYFPN RLKQWLGYLS RQYPEAENLF MQVRRLRDSK
EIVQVLRQDT
|
|---|
| |