| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2908 |
|---|
| Symbol | |
|---|
| ID | 4174667 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 3522801 |
|---|
| End bp | 3523823 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638055922 |
|---|
| Product | cobalamin synthesis protein, P47K |
|---|
| Protein accession | YP_662470 |
|---|
| Protein GI | 109899215 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0523] Putative GTPases (G3E family) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.127945 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGTTGC CTGCTCCTAC ATCAGCCATT CCCACAAACA TAATTACAGG CTTTTTGGGG
ACAGGGAAAA CCAGCCTTAT TAAGCAGTTA CTTACCCTTA AGCCTAAAGA TGAGCGCTGG
GCGATTTTAG TCAATGAGTT CGGTGAAGTT GGAATAGATG GCGCTTTTTT CAAAGGGCGA
CCTGAAGATA ATATTTACAT CAGAGAAGTG CCCGGGGGTT GTATGTGTTG CACCTCGGGC
TTGCCCATGC AAATAGCGCT CAATCAGTTA ATTTCCTATG CTAAACCCCA CCGGCTGTTA
ATTGAGCCGA CAGGTGTAGG CCACCCTAAA GAAGTACTCG CTGCCTTGCA GCAACCCCAT
TATCAAGATG TGTTTGATAT TCAGGCAACG CTTACGTTAG TGGATGCCCG CGTAATCGCT
CAGCCGCGTT ATCGTGAAAA CCTCATTTAC CAAGAACAGT TGTCCATTGC CGATCGTATT
ATTGCGACCA AAATCGATTT ATATAAAGGT GATGAAGTTG GCCATTTAAA AAGCTATCTT
GCAGAGCAAG GCTTAGCCAA TACGCCTTTG ACTATGTTAG ATAGTCCTCT GGCTGATCTG
TCTATACTTG CGGGCACGAC CGGCAGTGTT ACAGTTAAAG CTCAGGCTTT ATCTGACAAG
TCTGAACATA AACATGAAAA AGAAGAGTCG CTAGTTGATG ATTTACAGCA CGCGTTACAG
CGAACTGGCC GCGTTACCAT AGAAAATACC GCACAGGGGT TTTCCTCTCA AGGCTGGATA
TTCAATGGCG ATAAAATATT TGATTTCACT CAGGCGATGA ACTTGCTCAG TGTGGTTGAG
GTGGATAGGT TAAAAGCCGT GCTTATTACT GAAAAGGGTA TTTTCGGATT CGATAAAGTT
GACGAGGTGC TGACCTGTAT CGAGCTTGAT GAAAGCCCAG ATTCTCGCCT TGAGATCATT
GATGCTGACG CGACTAGAAT TAGCACTGCT GTGAATAAAT TAGAAAGTAC GCTCTTTGCC
TAA
|
|---|
| Protein sequence | MLLPAPTSAI PTNIITGFLG TGKTSLIKQL LTLKPKDERW AILVNEFGEV GIDGAFFKGR
PEDNIYIREV PGGCMCCTSG LPMQIALNQL ISYAKPHRLL IEPTGVGHPK EVLAALQQPH
YQDVFDIQAT LTLVDARVIA QPRYRENLIY QEQLSIADRI IATKIDLYKG DEVGHLKSYL
AEQGLANTPL TMLDSPLADL SILAGTTGSV TVKAQALSDK SEHKHEKEES LVDDLQHALQ
RTGRVTIENT AQGFSSQGWI FNGDKIFDFT QAMNLLSVVE VDRLKAVLIT EKGIFGFDKV
DEVLTCIELD ESPDSRLEII DADATRISTA VNKLESTLFA
|
|---|
| |