Gene Patl_2890 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2890 
Symbol 
ID4174649 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand+ 
Start bp3501812 
End bp3502381 
Gene Length570 bp 
Protein Length189 aa 
Translation table11 
GC content46% 
IMG OID638055904 
Producthypothetical protein 
Protein accessionYP_662452 
Protein GI109899197 
COG category[S] Function unknown 
COG ID[COG2353] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.11559 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGAAAGT CACTTTTAGC ATTCAGTTTA CTTGCCCTAT TGACTGGCAA CGCATTTGCC 
GCAGATTATG TGGTGGACAC AGCAGGCGCT CATGCCTCAA TTAACTTTAA AATTCAGCAT 
CTTGGGTATT CTTGGCTAAC CGGTCGTTTC AATACCTTCG ATGGTAAGTT CAGTTACGAC 
CCGGCCAAAC CTGAAGCCTC TACCATCTCT GTGAATATCA ATACGGATAG TCTTGACTCA 
AATCATGCTG AGCGTGACAA ACACTTGCGC GGTGAAGATT TTCTGTACGT CAAAAAATAT 
CCAATCGCTA AGTTTGTGAG CACCAAGGTA GAAAGCTTAG GCGGAGAGCG CTTAAAGATA 
TTCGGGGACC TATCTCTGCA TGGGATCACT AAACCTGTGA TCATCATGGC CGAGAAAATC 
GGAGAAGGAA AAGATCCTTG GGGCGGTTAC CGTGTAGGCT TCTCAGGCAC CACACGCATC 
GCTATGGCAG ATTATGGCAT TATGACAAAT TTAGGGCCTA GCTCGACTCA TGTTGAGCTG 
ATGCTGAACC TAGAGGGTGT TAAGCAATAA
 
Protein sequence
MRKSLLAFSL LALLTGNAFA ADYVVDTAGA HASINFKIQH LGYSWLTGRF NTFDGKFSYD 
PAKPEASTIS VNINTDSLDS NHAERDKHLR GEDFLYVKKY PIAKFVSTKV ESLGGERLKI 
FGDLSLHGIT KPVIIMAEKI GEGKDPWGGY RVGFSGTTRI AMADYGIMTN LGPSSTHVEL 
MLNLEGVKQ