| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2888 |
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| Symbol | |
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| ID | 4174647 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 3500308 |
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| End bp | 3500928 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638055902 |
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| Product | phosphoribosyl-ATP pyrophosphohydrolase |
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| Protein accession | YP_662450 |
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| Protein GI | 109899195 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0139] Phosphoribosyl-AMP cyclohydrolase
[COG0140] Phosphoribosyl-ATP pyrophosphohydrolase |
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| TIGRFAM ID | [TIGR03188] phosphoribosyl-ATP pyrophosphohydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.166007 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATCATCA ATAAGCAAAA CGTTGAGCAA TTGGCTTGGC AGAAAATGGA CAACCTTCTT
CCATGCATCG TGCAAGATGC GTCTACAGGC AAAGTTTTAA TGCAGGGGTA TATGAACAGT
GATGCCATTC ATCACACCCT TGAAACGGGC CACGTTACCT TTTTCAGCCG CTCAAAGCTG
CGCCTTTGGA CCAAAGGGGA AACCTCTGGC CACACACTAA ATCTCGTTCA GCTCAGCGCT
GATTGCGATC AAGATTCAAT ACTGGCTCTC GCTCACCCCA ATGGCCCAAC GTGTCACTTA
GGTAACGAAA CCTGCTGGGC TGATGCCGCT GCACCAGACG TCAGTTTTAT CGCAGAGTTG
GAGCAGGTTA TTGCATCACG CAAGGGCGCA TCTCCTGATT CTAGCTATAC CGCCCACCTT
TACAGCAAAG GGATAAAACG AATTGCCCAG AAAGTGGGTG AAGAAGGGGT TGAAACTGCA
TTAGCGGCCA CGGTAAAAGA TTTGGACGAG CTTAAAAATG AATCGGCTGA TTTGCTATAC
CATCTACTGG TACTGTTGCA AGCAAGTGAT TTGTCATTAA GCGACGTCAT CGAAGTACTA
AAAACTCGCC ACGCGAAATA G
|
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| Protein sequence | MIINKQNVEQ LAWQKMDNLL PCIVQDASTG KVLMQGYMNS DAIHHTLETG HVTFFSRSKL
RLWTKGETSG HTLNLVQLSA DCDQDSILAL AHPNGPTCHL GNETCWADAA APDVSFIAEL
EQVIASRKGA SPDSSYTAHL YSKGIKRIAQ KVGEEGVETA LAATVKDLDE LKNESADLLY
HLLVLLQASD LSLSDVIEVL KTRHAK
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