| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2865 |
|---|
| Symbol | |
|---|
| ID | 4174624 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 3475211 |
|---|
| End bp | 3477607 |
|---|
| Gene Length | 2397 bp |
|---|
| Protein Length | 798 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638055879 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_662427 |
|---|
| Protein GI | 109899172 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000308376 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTACTAA GACCTAGCAC ACTACACTCA GGTATCACGC GCGCACTCGC TATCGGTACG
TGCATGACAA TCGGCTTCGC CGCCAACGCA CAAGAAGCTG TGCCGGCAGA AGATAAAGGC
CTAATGGAAA AGATCACTGT TACGTCGCAA AAACGCGTAG AAAACCTCAA CGAAGTGCCT
GTTGCTGTAT CAGTGTTACG TGAAGATCAA ATTAACTCGG CGTTCTCTGC AAACATTGAA
GGCTTACAAG CTTTGGTGCC TTCAGTTAGC TTTCGTAAAG GTAACACCAA CCGTAACTCG
GCAATCACAG TACGTGGTAT CGGTACTATT TCATTCAGTG TGGCGGCAGA GCCAAGTGTA
TCTACCGTGG TTGATGGTGT GGTGCTAGGC CGTTCTGGGC AGGCATTCGT TGATTTATAT
GACTTACAAC GCATCGAAGT ACTACGCGGC CCTCAAGGCA CTTTATTTGG GAAAAATGCG
TCAGCTGGTG TGGTTAACAT TACCACCAAG CGCCCTTCTG ATGAATTTGG CGGCACGGCC
GAAGTGACTT TATTTCAGGA CAACGAATAC CGTTTGAAAA CCAGTGTAAC AGGTGCATTG
AGCGATAACG TTAATGGTAG TTTGACGGTA CTTAAATCAC AGTTCGACGG CTACATCGAC
AATGTGTATA ACAACGAAAC AACCAACGGC TACGACAAGG AAGGTATCCG CGGTATGTTA
GACATTACCG CCGCTAACGA TACCGACATC CTATTCATTT TTGAAAACGT AAAATCAAAC
GACAATTGCT GTGCAGATTT AGAACTTGCA CCAAGCAACC GTTATGTTTC CTCTGACGCG
GCCCCTGACA GCACAGGCAA TGGCGACCTC GATTTAGAGC AACGTAAAAT TGACCATGAC
TTTGAAACTC GCACCATAGA TGAAACCACT GGTTTCTCAG TGCAAGTAGA TAAAATGATT
GGCGATCACG AATTTACTTC AATCACAGCT CACCGTAGCT GGGATAACAC CGAGTTTCGC
GAAGGTGATT TCACCTCAAC CACGGGCTCT ATTCCTTTGC CTGTTAACTT TGGTAGCGTG
CCGGACGGTG GCGTTGGATT TCAGCTTCAC GATACGGGTG TACAAAACTG GAAACAAACC
TCTCAAGAGT TTCGCATAGC CTCTCCTGTT GGCGGTGATT TTGACTATCA ATTAGGTGCA
TTCTGGTGGA CACAAAAATC TGAGCGTAAC TTTACCCGTG ACGCCAGCTG TCAAAATAAC
GGTGGTCAAT TCCCAGCGGC TATTGGCACA TACCTGACCG AAAGCCTTGG CGTAGCTGAT
CCTTCTGAAG CACAGATTAA TCAATTTATC GCCGATGAAA ATTTAAGCTG CAATGCTAAC
GACATCGTCA GTGCTACTGC CTTTATGCGC ACCCAATTCG ATAACTGGGC ACTGTTCGCT
GACGGTAAAT ATCACATTAA TGACGACTTA CGTTTATTGT TCGGTATTCG TTATACAGAT
GATGAGGTGA GTTACTCACA CGACCGTCGC AGTAACGATG AATACAAGCG CACAGGTGTG
GGCGTACGTA GCTTTGAAAC CAACTATCAA GGTGAAACTG ACGAAACGAA TGTATCAGGT
AAAATTGGTG TGCAGTACGA CTTAACTGAC AGCAGTATGG CATATTTCAC TTTCTCGCAA
GGTTATAAAG GCCCAGCGTT TAACGTGTTC TACAACATGG CCGATGCTGA TGCACTGCCC
ATTGATAAAG AAACATCTGA TGCTTTCGAG CTAGGTTATA AATACGCAAG CAACGATTTA
ATTTTCAACG CGGCTATTTT CAGAACTAAC ATCGATGGTT TCCAAGCGAA TAACTCTGAA
TTACTTGATG GTGTCACCAT TACCCGTTTA ACAAACGCGG GCTCGGTGAT TACTCAAGGT
ATCGAGTTTG ATTTGATGTG GCAGGTAACA GACGACTTCA CGCTAACCGG CGGCTTGTCT
AAAGTTGATG CTGAAGTGGA TGAGTTCAAA TGCCCAGTGA CTGATGCAAA TTGTACTGGT
CGCTCTGGTG CTGACTTACC TTTCTCACCT GACCTTAAGT ACTCAGTGAC AGGCGAATAC
TTATGGGAGC TTGATAACAT GAACGTTATC CTCAACAGCT CATATGTATA CACCGACGAA
ATGTACGCAG GTGCCCCAGG TGGCACCGCC ACAGCAGTAG ACTTGTTGCC AGATTACGGC
ATCTTAAACG CAAGCTTGGC GTTCTCGTTT GACGACGATG CATATCGCAT CAGCTTAATC
GGTAAAAACT TAACTGATAA GAGCTTTGTC ACTACTTACA GTGGCGATAA CTTCCGTTAT
CAAATTCCGC GTGATGCAGA CCGTTATTTC GGTGTTCAAT TACGTGCAAA TTTCTAA
|
|---|
| Protein sequence | MLLRPSTLHS GITRALAIGT CMTIGFAANA QEAVPAEDKG LMEKITVTSQ KRVENLNEVP
VAVSVLREDQ INSAFSANIE GLQALVPSVS FRKGNTNRNS AITVRGIGTI SFSVAAEPSV
STVVDGVVLG RSGQAFVDLY DLQRIEVLRG PQGTLFGKNA SAGVVNITTK RPSDEFGGTA
EVTLFQDNEY RLKTSVTGAL SDNVNGSLTV LKSQFDGYID NVYNNETTNG YDKEGIRGML
DITAANDTDI LFIFENVKSN DNCCADLELA PSNRYVSSDA APDSTGNGDL DLEQRKIDHD
FETRTIDETT GFSVQVDKMI GDHEFTSITA HRSWDNTEFR EGDFTSTTGS IPLPVNFGSV
PDGGVGFQLH DTGVQNWKQT SQEFRIASPV GGDFDYQLGA FWWTQKSERN FTRDASCQNN
GGQFPAAIGT YLTESLGVAD PSEAQINQFI ADENLSCNAN DIVSATAFMR TQFDNWALFA
DGKYHINDDL RLLFGIRYTD DEVSYSHDRR SNDEYKRTGV GVRSFETNYQ GETDETNVSG
KIGVQYDLTD SSMAYFTFSQ GYKGPAFNVF YNMADADALP IDKETSDAFE LGYKYASNDL
IFNAAIFRTN IDGFQANNSE LLDGVTITRL TNAGSVITQG IEFDLMWQVT DDFTLTGGLS
KVDAEVDEFK CPVTDANCTG RSGADLPFSP DLKYSVTGEY LWELDNMNVI LNSSYVYTDE
MYAGAPGGTA TAVDLLPDYG ILNASLAFSF DDDAYRISLI GKNLTDKSFV TTYSGDNFRY
QIPRDADRYF GVQLRANF
|
|---|
| |