Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_2862 |
Symbol | |
ID | 4174621 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 3471944 |
End bp | 3472495 |
Gene Length | 552 bp |
Protein Length | 183 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638055876 |
Product | tripartite ATP-independent periplasmic transporter DctQ |
Protein accession | YP_662424 |
Protein GI | 109899169 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.779712 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAAATG CTGTCAGTCG CGGGTTTTTA GCCGTTAATC GCCCGCTAGG TAAGGTCAAT TATGCCATCA GCACCCTTGG CAAAAATATT GCGGGCGTGC TGTTAAGCGC TATGTTGCTG ATGATTTTAG CTCAGGTGTT CTACCGTTAT GTGTTAAACG ATTCCCTAGC ATGGACCGAA GAGCTCGCGA AATACTTGAT GGTATGGGTC ACGTGTTTAG TTGCCCCTTG GGCTTATCGT GAAAATTTAA ACGTGTCTAT CGAGATGTTT GCCGACGCCC TTCCCAAAGG CTTACGCAGA ATGTCAGAAA TTATAATCAC CCTCTTAGTG ATTATGATAA GCGCAGTGTT TTTCAAACAA AGCGTGGCAT TTTTCCAAGG TGGTTTTGAA ATATATGCCT CGTCCATGCC CGTCAAGCTT GCTTACTTTT ATGCCTGCGC ACCGTTAATG TTTGCGGCCC TGTTTTTAGT GGGTATCGAA AACCTGATCA AACAACTCTT TGCTCGTGCT TATCTCACTG CGCAAACGAT TCCCCCCATG GAAGTAGAAT AA
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Protein sequence | MQNAVSRGFL AVNRPLGKVN YAISTLGKNI AGVLLSAMLL MILAQVFYRY VLNDSLAWTE ELAKYLMVWV TCLVAPWAYR ENLNVSIEMF ADALPKGLRR MSEIIITLLV IMISAVFFKQ SVAFFQGGFE IYASSMPVKL AYFYACAPLM FAALFLVGIE NLIKQLFARA YLTAQTIPPM EVE
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