Gene Patl_2862 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2862 
Symbol 
ID4174621 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp3471944 
End bp3472495 
Gene Length552 bp 
Protein Length183 aa 
Translation table11 
GC content45% 
IMG OID638055876 
Producttripartite ATP-independent periplasmic transporter DctQ 
Protein accessionYP_662424 
Protein GI109899169 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.779712 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAAATG CTGTCAGTCG CGGGTTTTTA GCCGTTAATC GCCCGCTAGG TAAGGTCAAT 
TATGCCATCA GCACCCTTGG CAAAAATATT GCGGGCGTGC TGTTAAGCGC TATGTTGCTG
ATGATTTTAG CTCAGGTGTT CTACCGTTAT GTGTTAAACG ATTCCCTAGC ATGGACCGAA
GAGCTCGCGA AATACTTGAT GGTATGGGTC ACGTGTTTAG TTGCCCCTTG GGCTTATCGT
GAAAATTTAA ACGTGTCTAT CGAGATGTTT GCCGACGCCC TTCCCAAAGG CTTACGCAGA
ATGTCAGAAA TTATAATCAC CCTCTTAGTG ATTATGATAA GCGCAGTGTT TTTCAAACAA
AGCGTGGCAT TTTTCCAAGG TGGTTTTGAA ATATATGCCT CGTCCATGCC CGTCAAGCTT
GCTTACTTTT ATGCCTGCGC ACCGTTAATG TTTGCGGCCC TGTTTTTAGT GGGTATCGAA
AACCTGATCA AACAACTCTT TGCTCGTGCT TATCTCACTG CGCAAACGAT TCCCCCCATG
GAAGTAGAAT AA
 
Protein sequence
MQNAVSRGFL AVNRPLGKVN YAISTLGKNI AGVLLSAMLL MILAQVFYRY VLNDSLAWTE 
ELAKYLMVWV TCLVAPWAYR ENLNVSIEMF ADALPKGLRR MSEIIITLLV IMISAVFFKQ
SVAFFQGGFE IYASSMPVKL AYFYACAPLM FAALFLVGIE NLIKQLFARA YLTAQTIPPM
EVE