Gene Patl_2859 details

Gene Information

• Locus tag: Patl_2859
• ID: 4174618
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 3466633
• End bp: 3468618
• Gene Length: 1986 bp
• Protein Length: 661 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 638055873
• Product: Alpha-amylase
• Protein accession: YP_662421
• Protein GI: 109899166
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0366] Glycosidases

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGACAT CTTTAAAAAC CATTGCTTGT GCACTGGCAG TTAATTTTAG CACTCAAAGC 
AGTGCAGCCC CCACAACTTT TGTCCACTTA TTTGAGTGGA ATTGGCAAGA CATAGCCACC 
GAATGCGAAA CCTTTCTGGG CCCCAAAGGC TATGCCGCGG TTCAAGTATC GCCACCAAAC 
GAGCACATCA CCGCACAGCA GTGGTGGGCT CGTTATCAAC CCGTTAGCTA CGTGTTGCAA 
AGCAGAGGGG GAAACCGCGC GCAGTTCATT GACATGGTGC AACGCTGTGA TTCAGCAGGC 
GTAGATATTT ACGTAGACGC GGTCATTAAC CATATGGCGG CAGGCTTAGG AAATGGAACT 
GCTGGCAGCA GTTTTGGCGC CAAGCAGTAC CCTATATTTT CCCCCCAAGA CTTCCATACA 
ACCTGCACAA TCAATAACTA CAGTGACCGA GGACAGGTAC AAAATTGTGA ATTGGTTGGC 
CTAGCTGATT TAGACACGGA CGCGCCTTAC GTTCAAGACA CCATCGCCGC CTACTTAAGT 
GACTTGACCA ACATAGGCGT TAAAGGGTTT AGATTAGATG CCGCGAAGCA TATGCCTAGT 
GCCGATATAT CCAGTATATT ATCCAAAGTC GCGGGCAATC CCTTGATATT TCAAGAGGTC 
ATCGATCAAG GCGGGGAAGC TGTATCAGCC AGTGAGTATG CCAGTAATGG CTTAGTCACC 
GAGTTTAAGT ACAGCGTTGA AATAGGTAAC ACCTTTCGAA ATGGTAAATT AGCGTGGCTA 
AGTAATTTTG GAGAAGACTG GGGGTTCATG CCTAGCTACC AAGCAGTGGT CTTTGTTGAC 
AACCATGATA ATCAGCGGGG TCACGGCGGC GGTGGCAACG TTATTACGTT TGAAGATGGC 
AGGTTATACG ATCTCGCAAA TGTGTTTATG CTTGCCTATC CCTATGGATA TCCAAAGGTC 
ATGTCCAGCT TTGACTTTCA TTCTGATACC GATGCAGGTG CGCCCAATAT GCGCGTACAC 
AATAACGGTA ATCTTGAATG CTTTGGGCAA AACTGGAAGT GCGAACATCG CTGGAGTTAC 
ATTGCTGGTG CGGTAGATTT TCGAAATAAT ACCCATGACG ATTTCTCACT GTCCGACTGG 
TGGGATAATG GTGCTAATCA AATCGCCTTC GGCCGCAGCA GCTCAGGCTT TGTAGCCATC 
AATAAAGAGA GCTATCAACT TAACGCAAGC GTATCCACTT CAATGGCACC AGGACAATAC 
TGCAATGTAC TGAAAGGTCA ACTTACCAGT GATGCTCAAA GCTGTTCCGG GGAGGTTGTA 
ACCGTACAAA ACGACGGAAC CATAAACCTT AGCGTGGTTC CTTTTGATGC GATAGCGATT 
CATCACAATG CAAAAATCAC AGACTCTGCC CCTACTCAAA ATAGCCAAAG AACGGTCATA 
TTCATTAAAG CACAGACGCA AAATGGTCAG GATATGTTCG TGCGCGGCGG TATAGACCAT 
GCCTATGCCA GCAGCCAATT AGGCAAGGCC TGCACGGCAG AAAACTATCA ATGTGCAATT 
CCAATCACCC ACAATAATCT GCGCAACACA ACCACGGCGG TGTGGAAACA GAATGAACAA 
TACCTAGATT GGTATGGTGC TGAAAGCGCG CAAAATGCAG CCGCACAAGG CACCGCAATG 
GACTGGACGA CAAACCTTTG GCCCGACAGC TATGGCCCAC ACAAAACAGT GGTCAACGAC 
GGGTTTGGAC AAGAAGTACT CAATGCGTGG GGGGAGCATT ACTGGATGCT GGATGTACAA 
ATGGATTGCA GTAAAACCGT AAACGGCTGG TTCGAACTCA AGGCCTATGT AAAAAACGGA 
CAAGGCTTTG AAGGCGACGT GCAGCAAATC GGTACACCTT ATCCTTCGAG CAATCATTTC 
GCTCAATGCG GTAAGATAAA CCGATTCGAA TTCAACAGTT CAACTGCGTA TATCGTGCCG 
TTTTAG 

 

Protein sequence

MKTSLKTIAC ALAVNFSTQS SAAPTTFVHL FEWNWQDIAT ECETFLGPKG YAAVQVSPPN 
EHITAQQWWA RYQPVSYVLQ SRGGNRAQFI DMVQRCDSAG VDIYVDAVIN HMAAGLGNGT 
AGSSFGAKQY PIFSPQDFHT TCTINNYSDR GQVQNCELVG LADLDTDAPY VQDTIAAYLS 
DLTNIGVKGF RLDAAKHMPS ADISSILSKV AGNPLIFQEV IDQGGEAVSA SEYASNGLVT 
EFKYSVEIGN TFRNGKLAWL SNFGEDWGFM PSYQAVVFVD NHDNQRGHGG GGNVITFEDG 
RLYDLANVFM LAYPYGYPKV MSSFDFHSDT DAGAPNMRVH NNGNLECFGQ NWKCEHRWSY 
IAGAVDFRNN THDDFSLSDW WDNGANQIAF GRSSSGFVAI NKESYQLNAS VSTSMAPGQY 
CNVLKGQLTS DAQSCSGEVV TVQNDGTINL SVVPFDAIAI HHNAKITDSA PTQNSQRTVI 
FIKAQTQNGQ DMFVRGGIDH AYASSQLGKA CTAENYQCAI PITHNNLRNT TTAVWKQNEQ 
YLDWYGAESA QNAAAQGTAM DWTTNLWPDS YGPHKTVVND GFGQEVLNAW GEHYWMLDVQ 
MDCSKTVNGW FELKAYVKNG QGFEGDVQQI GTPYPSSNHF AQCGKINRFE FNSSTAYIVP 
F