| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2841 |
|---|
| Symbol | |
|---|
| ID | 4174601 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 3443217 |
|---|
| End bp | 3444554 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638055857 |
|---|
| Product | periplasmic sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_662405 |
|---|
| Protein GI | 109899150 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCGCAATT TATCCTTACG CCTGCGCAGC TTTGCCGCTG CCCTGTTGGT ATTAGTTGTA
TTCATTCCGC TGGCCGCATT TACCCTTGAG AGTGCGTTTA CCAGCAGTTT AAGTGAATCA
ATGCAGCAGC AATTGCGGGT GCAAAGCTTA ACGCTGATTT CTGAATTTGA AATGTCGGGT
ACCCAACCAG TGATGCCTGA GCACCTGTTT AACGATCAGC TCAACATCCC AGATTCAGGC
TTGTACGCGT TTATCAAGCT TGACGATGAC ATGGTGTGGC GATCGTTATC GACCCTCAAT
TGGCAGGTCA TGCCCGAATT TTATGCGCCG GAAGTGGGTA AAGAACGCTT CGATGAAGAA
TATGCCTTAC TCGAGCCGTA CTTTTTATTT GCCTATACAG CAGAGTTCGA TGCTGGCGGT
TATTTCGTTC CAGTGAGTTT CTATATTCTG CAAGATAAAA ACGCATATAA CGTACAAGAA
CAAGCCTTTA TCACCACGTT GTGGCGCTGG CTAAGCCTGA TCGCATTAGT CTTGCTTGGG
TTATTGATTC TCAGTCTAAA TGCTGCGCTA TGGCCAATTA ATCGCTTGAT CAAGCAAATC
AAACAAGCGG AAGCCGGTCA CATTCAACAC ATCAGCCAAA CCTATCCCCC TGAGCTTGAG
AAACTAAAAA GCAGTATCAA TCACCTGCTC GCCACTGAGC AACAGCAGCG CAGTCGCTAC
AAGAACAGCT TGAGTGATTT GGCCCACGGC TTAAAAACCC CTTTAGCTGT GCTATCTGGC
AATACAGCAT TGCCGGATGA TGCCAGAGAG CCCATCAATC AGATTGATTT GCAAATTCAG
CGCCAATTAA AACGTGCTGT TGCGGGCAGC AGCGCTGCAT GGGAGCAAGC CGTAGACATA
TCGCCTGTAT TGAACAAAAT AATCAATGCC ATGAACAAAG TGCATGCTCA AAAGCAGCTG
TCTATTGAAC ACGTAGAAAG TGACACAAAA GGTCAATTTT TCGGTGATAG CACGGATTTA
ATGGAGTTAT TGGGCAACCT ATTGGATAAC GCCTGTAAAG CTGCAAAGCA CAAGGTTCGA
GTTGAGATTT TAACGCACGA AAAGTTTGTA CAGATTGATG TGGAAGATGA CGGACCTGGT
ATTCCGAAAG AGAAACGTCA GTTATTACTG ACCAGAGGTA CTCGCCTTGA CAGCTACAAA
GAAGGCCAAG GGATCGGCAT GGCCGTAGTA GCTGATTTGG TTGACGCCTA TCAGGGCACC
TTGCTCATCG AAGACAGTGA ATTGGGTGGA GCACGCATTT GTGTGCGTTT TACAATGATC
AATGCGCCGT CAAAATAA
|
|---|
| Protein sequence | MRNLSLRLRS FAAALLVLVV FIPLAAFTLE SAFTSSLSES MQQQLRVQSL TLISEFEMSG
TQPVMPEHLF NDQLNIPDSG LYAFIKLDDD MVWRSLSTLN WQVMPEFYAP EVGKERFDEE
YALLEPYFLF AYTAEFDAGG YFVPVSFYIL QDKNAYNVQE QAFITTLWRW LSLIALVLLG
LLILSLNAAL WPINRLIKQI KQAEAGHIQH ISQTYPPELE KLKSSINHLL ATEQQQRSRY
KNSLSDLAHG LKTPLAVLSG NTALPDDARE PINQIDLQIQ RQLKRAVAGS SAAWEQAVDI
SPVLNKIINA MNKVHAQKQL SIEHVESDTK GQFFGDSTDL MELLGNLLDN ACKAAKHKVR
VEILTHEKFV QIDVEDDGPG IPKEKRQLLL TRGTRLDSYK EGQGIGMAVV ADLVDAYQGT
LLIEDSELGG ARICVRFTMI NAPSK
|
|---|
| |