| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2824 |
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| Symbol | |
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| ID | 4174584 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3425888 |
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| End bp | 3426757 |
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| Gene Length | 870 bp |
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| Protein Length | 289 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638055840 |
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| Product | pseudouridine synthase, Rsu |
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| Protein accession | YP_662388 |
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| Protein GI | 109899133 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.564406 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGAAA AATTACAAAA AGTCCTAGCC AATGCTGGTG TGGGCTCCCG TCGTGAGATG
GAAAAATGGA TAGCCTCTGG GCGCATTTCG GTTAACGGAA AAGTCGCCAC CTTGGGAGAT
CGCGTTGAGC CTCTAGATCA GCTTCGCGTT GATGGCAACC TTATCACCGC TGCGGCAAAA
AGCACGATAT GCCGAGTATT GATGTACAAC AAACCGGAAG GTGAGTTATG TAGCCGAAAA
GATCCACAAG GTCGCCCAAC TGTATTCGAC CGTTTGCCTA AGATTCAAAA TGGCCGCTGG
ATTGCGGTAG GGCGCTTAGA CATCAACACC AGTGGTTTGT TGTTATTTAC TAATGACGGC
GAGCTAGCCA ACCGTTTAAT GCACCCTAAG CATGAAATTG AGCGTGAATA TGCGGTGCGT
GTATTTGGTG AAGTGGATGA CGACATGATT AAACGCCTTA AGAAAGGTGT TGAATTAGAA
GATGGGGTCT CTAAATTTAC CGAAGTGCGC AAGCGCCCAG GTGATGATGA AAGCCTAAAT
AGTTGGTACA ACGTGAGCCT ATCTGAAGGG AAAAACCGTG AAGTTCGCCG ATTGTGGGAG
TCTCAAGGCT TGCAAGTTAG CCGCCTAATT CGCGTACGTT ACGGTACCTT GAATCTACAA
AATCGGCTTC CTCAGGGCGG TTGGATTGAG TTGCCACTGA CTGACCTGAA TACGTTGCGT
AAAAGTGTGC AATTGGATTT GGAGCAAGAA TCGCTGATCG AAGACAAGCA AACCAAGCTA
GACCACGTTC GCTTGAGTCG CATGCGCCGT TCAGTGCAAA AGCACAAGGT TAATCAAGGT
CGTGCCAAAG CAAGACCGAA AAAGAAGTAG
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| Protein sequence | MSEKLQKVLA NAGVGSRREM EKWIASGRIS VNGKVATLGD RVEPLDQLRV DGNLITAAAK
STICRVLMYN KPEGELCSRK DPQGRPTVFD RLPKIQNGRW IAVGRLDINT SGLLLFTNDG
ELANRLMHPK HEIEREYAVR VFGEVDDDMI KRLKKGVELE DGVSKFTEVR KRPGDDESLN
SWYNVSLSEG KNREVRRLWE SQGLQVSRLI RVRYGTLNLQ NRLPQGGWIE LPLTDLNTLR
KSVQLDLEQE SLIEDKQTKL DHVRLSRMRR SVQKHKVNQG RAKARPKKK
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