| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2810 |
|---|
| Symbol | |
|---|
| ID | 4174570 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 3410618 |
|---|
| End bp | 3411970 |
|---|
| Gene Length | 1353 bp |
|---|
| Protein Length | 450 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638055827 |
|---|
| Product | alpha amylase, catalytic region |
|---|
| Protein accession | YP_662375 |
|---|
| Protein GI | 109899120 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTAACA CCGAACCATC TGCTCATTCA TCTTCTGCTC ATGCGTCCAA CTTAACTGAT
CATCAGCCCC AGTCACCGGT GAAAATCCAA GCGCCAAGCT GGTGCAAAGA TGCGGTTATC
TATGAAATCA ATCTCCGCCA ATTTACCCCC GAAGGTACGT TTAGCGCGGC TGAGGCGCAC
TTGCCACGTT TAAAGCAACT CGGTGTAAGT ATTTTATGGC TCATGCCCAT TCATCCTATC
GGTAAAAAAA ATCGTAAAGG CTCCTTGGGC AGTCCTTATG CTGTGCAAGA TTACTTCGCG
CTAAACTCTG AGTTTGGCGA TCTTGATGAT ATGTGCCATT TTGTTGAAAT CGCACACGAG
TTAGGCTTTT ACGTCATCGT TGACTGGGTG GCAAATCATA GTGCTTGGGA CAATATTTTA
GTTGAACAGC ACCCCGACTG GTACGCCAAA AACCACGAGG GTGATTTCAC GCCTACGCCT
TGGTGGGACT GGGACGATAT AATCGATTTT GATTACTCTG TACCTGAACT TCGTGCCTAC
ATGGCCAGCG CAATGCGTTA CTGGATTAAG GAAACCGACA TAGATGGCTA CCGCTGTGAT
GTCGCTGGGT TCGTTCCCCA AGACTTTTGG GCCCAAGTGC GTGAGGAGCT AAGTGACATA
AAGCCAGTTT TCATGCTGGC TGAATGGGAA GCCCGTGACG TGCACTACGA CGCATTTGAT
ATGAGTTACG CGTGGTCGTG GAATGAAGCT ATGCACGGCA TCGCCATGGG AAAGCTACCG
CTGAGTAAAC TTTACAAATA TTATTCTTGG AATGAAAAAA CTTACCCCAA AGCATCAATG
CGGATGACCT TTGTCAGTAA TCACGACAAA AACGCGTGGG ACGGAACGCA ATTTGAGCAA
TTCGGCGATG CATTAGCGTG CGCCATTGTG CTGTCAGTGC TGGGGGAGGG AATGCCGCTG
ATTTACAATG GCCAAGAAGC TGGTAATCCA AAACGTTTGG CTTTTTTTGA GCGCGACCCT
ATCCATTGGC GTACCCACAA AATAGGTGAT TTTTATACTG ATTTGATCGC CCTAAAAAAA
GCGCACAGTG CCTTGCACAA TGGTCAGTGG GGCGCACGTA TGATCCCTGT GATGAACTCC
CATGCCGACA AAGTGTTCAG TTTTGTACGC CAAGACGAGA CAAGTAAAGT GCTGGTGCTA
CTTAACTTTA GCGGCGAGTC ACTAACGGTA TCGCTGTTAT CGAATATCGC GTTTGGGCGA
GTTACCGATT GGTTGAGCGG TGAGCGAATA GAGCTGACAA ATAGGTGTGA ATTAAGTCTA
GGGGCGTGGG GATGGCAGGT TTTTACGTCG TGA
|
|---|
| Protein sequence | MPNTEPSAHS SSAHASNLTD HQPQSPVKIQ APSWCKDAVI YEINLRQFTP EGTFSAAEAH
LPRLKQLGVS ILWLMPIHPI GKKNRKGSLG SPYAVQDYFA LNSEFGDLDD MCHFVEIAHE
LGFYVIVDWV ANHSAWDNIL VEQHPDWYAK NHEGDFTPTP WWDWDDIIDF DYSVPELRAY
MASAMRYWIK ETDIDGYRCD VAGFVPQDFW AQVREELSDI KPVFMLAEWE ARDVHYDAFD
MSYAWSWNEA MHGIAMGKLP LSKLYKYYSW NEKTYPKASM RMTFVSNHDK NAWDGTQFEQ
FGDALACAIV LSVLGEGMPL IYNGQEAGNP KRLAFFERDP IHWRTHKIGD FYTDLIALKK
AHSALHNGQW GARMIPVMNS HADKVFSFVR QDETSKVLVL LNFSGESLTV SLLSNIAFGR
VTDWLSGERI ELTNRCELSL GAWGWQVFTS
|
|---|
| |