| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2780 |
|---|
| Symbol | |
|---|
| ID | 4174540 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 3373364 |
|---|
| End bp | 3374272 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638055797 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_662345 |
|---|
| Protein GI | 109899090 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00291479 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTGA TTTACATCAC TATCTGTCTA ATAACATCAT TTTCCCTCTG GCTTTTGCGT
TACTATGCGA CTCTAAATCG AGCCGCCAGA AGACGGCCGT TGCTCCCGTT CTCTGTGAAC
ATTACATTGC CTAAATTTAT GACCTTTAAT CTGTTACAAC GCACATTCTT TCTTTTAGGG
TTACCCCTGA CGAGCATTTT CGCGTTTGCA AATACAATTC CTGCGGATAT TGCCACTGAA
GAAAATTCAG CCACACAACA AGCGCCTATT ATACAGGCGG TTGAGGAAAA CCCGTTCAAA
GAGCAATTCA TCCTTAGCTA TGTTGAGTAT CCTGGCGCAG AGCCATACCT AAAGGTGATC
CAAGAGATAT ACACAGAACT TGGATTTAAC GTTAAGAGCA TTGCGACACC TGCACTAACA
GGCATAACAC TGCTAAGCAA AGGCAAAGTC GATGGAGACG CTTATCGACT AGGCAAAGTA
GTGACCACAT TTGACGATCT TGTTCTGGTT AAGCCCGAGT TAATTCGCGC CACGTTAGTC
TTGCTATGTA TCCAAGAGGT GGAGTGCGAC CGAGCAGTAT TAGATAACAG CCAAAACACC
CTACTAACGA ATGCCAGAGC ACTGGAATAT CTTAAGGAAG TAGATGTTCG AGCAACCCTA
ATAAAAGACG AAGTCATTCA ACACACAGTA GAGATGCTTG TCTCGGGGCA AGTAGAATAT
GCCACGTTTA TGATCGACGA GCGGCAAATC ATTCCTAAAG GGATGCAAAT GGTAAAATTA
AGGAATATTT TTCTTTACCA CGTGATCCAC AAAAAGCACG CGGCCTTGTT ACCTCAGATA
GAACAAAAAT TGCGCCACAA ACGTCGTTTG TTACACACCA CACTTTTTAA CCCTAAAAAA
CGGTCTTAG
|
|---|
| Protein sequence | MDLIYITICL ITSFSLWLLR YYATLNRAAR RRPLLPFSVN ITLPKFMTFN LLQRTFFLLG
LPLTSIFAFA NTIPADIATE ENSATQQAPI IQAVEENPFK EQFILSYVEY PGAEPYLKVI
QEIYTELGFN VKSIATPALT GITLLSKGKV DGDAYRLGKV VTTFDDLVLV KPELIRATLV
LLCIQEVECD RAVLDNSQNT LLTNARALEY LKEVDVRATL IKDEVIQHTV EMLVSGQVEY
ATFMIDERQI IPKGMQMVKL RNIFLYHVIH KKHAALLPQI EQKLRHKRRL LHTTLFNPKK
RS
|
|---|
| |