| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2719 |
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| Symbol | |
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| ID | 4174479 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3312521 |
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| End bp | 3313363 |
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| Gene Length | 843 bp |
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| Protein Length | 280 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638055737 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_662285 |
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| Protein GI | 109899030 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.708737 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTCAAT ACCCTGAATT ACAAGGCAAA GTCGCCGTCA TTACCGGCGC GGGTCGCCAA
GCTGGACTAG GTGAAGCCAT GGCAAAACGC CTAGCGTCAG AGGGCTGCAA AGTGGTGCTC
ACTGACATCG GTAAATCTGT TAGTGAACAC ACCCCTGATA ACGCTATCGG TCACAGCGGT
GAAATGAACC AAATCGTTGC AGACATAAAG CAAGCGGGCG GCGAAGCCAG CGCGTTTGTG
TGCAATGTAC TGGATGAAAA AGACGTGCAA GCGGCAGTGA AATTCGCAGT AGATACCTAC
GGATCTGTCG ATATTTGGGT AAACAATGCC GGCATCGGTT ACTTGATGAA ATCCATTTTA
GACATGCAAG TGGATGAATG GGACGCCGTA CTTGGCGTTA ACCTGCGTGG CACCTTCCTT
GGCATTAAAT ACGCTGCTGA ACAAATGGTT AAGCAGGGCA AGGGTGGCAA AATTATTAAT
ATTGGCTCCC AAGCATCTAA ATCAGCATTC GGCCATGCTT CCGCTTACAC CACCTCAAAA
CATGGCATGA ACGGTTTGAC TCGCGTAGCG GCTATTGAGC TTGGCAGCCA CAAAATAAAC
GTCAATGAAA TTTGCCCAAA TCACGTGACT ACGGGCTTGG GCGCGTGGCA GAACGCACAT
TTCTCAGAGG TGACTGGCAA AGGCCATGAA CAGTATATGC AAGACATGCG AGACCGCATT
CCTCTGGGCC GACCAGGCTT GCAAGAAGAC ACCGCCAAAG CATGCGCTTT CTTATGTTCA
GATCAAGCCA GTTACATCAC GGGTGAGTGC ATGAACGTGT CCGGCGGTGA AGAGTATCAC
TAG
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| Protein sequence | MSQYPELQGK VAVITGAGRQ AGLGEAMAKR LASEGCKVVL TDIGKSVSEH TPDNAIGHSG
EMNQIVADIK QAGGEASAFV CNVLDEKDVQ AAVKFAVDTY GSVDIWVNNA GIGYLMKSIL
DMQVDEWDAV LGVNLRGTFL GIKYAAEQMV KQGKGGKIIN IGSQASKSAF GHASAYTTSK
HGMNGLTRVA AIELGSHKIN VNEICPNHVT TGLGAWQNAH FSEVTGKGHE QYMQDMRDRI
PLGRPGLQED TAKACAFLCS DQASYITGEC MNVSGGEEYH
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