| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2713 |
|---|
| Symbol | |
|---|
| ID | 4174473 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 3306493 |
|---|
| End bp | 3307653 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638055731 |
|---|
| Product | Alpha-methylacyl-CoA racemase |
|---|
| Protein accession | YP_662279 |
|---|
| Protein GI | 109899024 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAATTAG ACGGCTATCG AGTACTCGAC CTATCTTTGT TTCTACCCGG ACCGCACTTC
ACCATGATGA TGGCGGATCA CGGGGCAGAG GTCATCAGCC TAGAGCCGCC CACAGGTGAG
CCAGTGCGTG AAATTGGCTT GAAGCAAAAC GGCCAGTCTG TGTGGTTCAG AAATGTGTTT
CGCGGCAAGA AAAGCATCAA CTTAAATTTA AAAAGTGATG CAGGAAAACA GGCGTTTTAT
AAGCTTTGCG AAACCGTTGA TGTGGTGGTG GAAGCATTTC GCCCCGGTGT GGTCGAGCGC
CTAGGTATTG ATTTTGAAAC GATTAAAAAA ATTAACCCCA AGATCGTCTA TTGCTCAATT
TCGGCGTATG GCCAGACGGG GCCCAAACGT TTGAACCCCG CACATGATTT GAGTATTCAA
GCGGACTCAG GCGCTTTGCA AATCAATCAA GGACAAGATG GAAAACCAGC GCAACCGGCT
ATGCCAGTGG CCGATATGGC GGGCAGCTTA ATGGCCTTTT CTGGGGTGTT GATGGCGTTG
TTACGCTGTC AACAAACTGG GCAAGGGGAT TACCTTGATA TTTCTATGCA AGACTCGCTA
GTGGCATGGT ACGCCAACGT AATGGGCCCA CCTTTTGCCG AAAACCGCTC CCCCGAGCCT
AAAGATGAGC GTAGTTGGGG CGGGGCAGCC ATGTATAACA TTTATCAAAC CCGCGACGGC
GAGCACCTAA CGCTTGGTGG CAGTGAAGTT AAATTTGCCA AAAATTTACT GACGGCACTG
GGCAGAGAAG ATTTAATTCC ACTTTGCTCT GAACCTCCTG GTGAGGCACA ACGGCCAGTC
AAAACCTTCT TTCAAAATAC TTTTGTGACG AAAACACTGA GCCAATGGAG CGAATTCTTG
GCTGACATAG ATGTGTGCTG GTCACCTGTG CGCAGCTTGA ATGACGCCGT TCGTGATGCA
CATTTAGCCC AGCGCGATAT GTTGTTAACT GATGAGCAAG GTAACGTGCA TTTAGGGGTG
CCGGTTAAGT TTAAACAAGA GCCAGCACAG CCCAGTTTTA CTTTACCGGC GTTTAGCCAA
GACACTGAAA ATTTGCTTAT TGAGCTGGGT TACAGTGATA CAGAAATTGC CACCATGCGC
AGCAAAAATG CGTTTATTTA A
|
|---|
| Protein sequence | MKLDGYRVLD LSLFLPGPHF TMMMADHGAE VISLEPPTGE PVREIGLKQN GQSVWFRNVF
RGKKSINLNL KSDAGKQAFY KLCETVDVVV EAFRPGVVER LGIDFETIKK INPKIVYCSI
SAYGQTGPKR LNPAHDLSIQ ADSGALQINQ GQDGKPAQPA MPVADMAGSL MAFSGVLMAL
LRCQQTGQGD YLDISMQDSL VAWYANVMGP PFAENRSPEP KDERSWGGAA MYNIYQTRDG
EHLTLGGSEV KFAKNLLTAL GREDLIPLCS EPPGEAQRPV KTFFQNTFVT KTLSQWSEFL
ADIDVCWSPV RSLNDAVRDA HLAQRDMLLT DEQGNVHLGV PVKFKQEPAQ PSFTLPAFSQ
DTENLLIELG YSDTEIATMR SKNAFI
|
|---|
| |